Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2436 179 1e-41 >seq2436 Length=7030 Score = 179 bits (198), Expect = 1e-41 Identities = 212/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || ||||| || || | || || || || ||||||||| |||||||| Sbjct 6257 GGCACGACGGCTGCTACGGTTTCAAGAGTGCGAGCACTGTACGACTTCGTTCCCTCGGAG 6198 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| | | ||| || ||||| | |||||||| |||||||| || |||||| Sbjct 6197 CCGGGCGAGCTCGAGTTCAAGAAGGGCGATGTCATTGCGGTGCTCGAGTCCGTTTACAAG 6138 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || || |||| || || ||||| || ||||| |||||| Sbjct 6137 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTTAACTACGTCGAG 6078 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||| || ||| || ||||| | | || || |||||||| || || || Sbjct 6077 AAGCTTACGGACCCGACCCCCGATGAGCTGGCACGCGAGGCCCAGATGGAAGCCGAGGTG 6018 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| ||||||||||| || ||||||||||| | |||||||||| Sbjct 6017 TTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACATTGCTGAGCAC 5971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944125405725