Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_021223.1 Length=1762 Score E Sequences producing significant alignments: (Bits) Value seq2003 174 2e-40 >seq2003 Length=8669 Score = 174 bits (192), Expect = 2e-40 Identities = 396/585 (68%), Gaps = 17/585 (3%) Strand=Plus/Minus Query 246 AAGCTTGCCGCTCTGGCGGCCATTGTGGAACGCGGTAAGAGCCTGGCCGTCCACACCGGC 305 ||| | ||||| || || ||| | || | || |||||| | ||||||| ||| ||| Sbjct 6338 AAGTTGGCCGCCCTCGCCGCCTTGGTTGTGGCTGGCAAGAGCGTCGCCGTCCGCACGGGC 6279 Query 306 TA----CGCCGGAGCGGCCCACGCCACCCGGGACCCCGTGGACCTGGCCAAGACATCCAT 361 || || | |||| || || |||| || || ||||| || || ||| | || || Sbjct 6278 TATTACCGTGGCAGCG-CCTACACCACTCGCGATCCCGTCGAGCTCGCCCGTGCCTCGAT 6220 Query 362 GACGCCCGCC-GAGGTGAAGCAATACGAGACATGGGCCCGTGGCATCCGCATGCCTGAGT 420 ||| ||||| || | ||||| | | |||| || |||||||| || | Sbjct 6219 GAC-CCCGCAAGAACTTCGGCAATTCAACGTGTGGGAGAAGGGGGCTCGCATGCCCGAAT 6161 Query 421 TCAACTTCGTCAC-CAACCGAGAGCCCCTTCGCGGTCAGGAGGGAGCCCGTAAACGATAC 479 | |||||| ||| ||| || |||| | ||| || | ||| |||||||| Sbjct 6160 TTGACTTCG-CACTCAATCGTAAGCCAATACGCAACACCGAAGCCAACCGCAAACGATAT 6102 Query 480 GAGCGACGCGCCCGCGCCATGAATAAGATCTGGAAGACCAATGTTGCAGTGGCAGAGAAC 539 ||||| ||||||||||| ||||| ||||| |||||||| | ||||||||||| |||||| Sbjct 6101 GAGCGCCGCGCCCGCGCTATGAACAAGATATGGAAGACGGACGTTGCAGTGGCGGAGAAC 6042 Query 540 GCCATGTTTGTGTCTATTCACCTGACCTACATGGTGCCCCTCGTCGCCGCAGTTTCAAAG 599 ||||||| || || | |||| | ||| | || || ||| ||| || | ||| Sbjct 6041 GCCATGTGGGTCTCCACCAACCTCTCGTACGCCATCCCACTGCTCGTCGCCGTCGCCAAG 5982 Query 600 ATTGAGGCGGCGGAGATGGAACTGGTCGGCGGCTCCAAC--GACCTCACGGAGATGGAGC 657 |||||| ||| | || || | ||||| ||||| || |||| |||||| Sbjct 5981 ATTGAGCTGGCCTAACAAGAGCTTATTGGCGG--CCAACAGGAGCTCAGCTCCGTGGAGC 5924 Query 658 TGGCCGAGGTGCAGACCGCTCACAAGATCACATCCATCGCGAGCGCCAATATGAACAGCA 717 | |||||| | |||||||||||| | ||| ||| | | || ||| | || Sbjct 5923 TTGCCGAGATTCAGACCGCTCACCGCGCCGTCGCCACCGCCACCACCCGCTTGA--ATCA 5866 Query 718 TG--ATGGAGCAGATTCGCCGACTGACCTCAAGCATCAACTCATCGAAGGAGATCATTCA 775 || | ||||||||| ||||| || ||| | ||||||||||| ||||| || || Sbjct 5865 TGTCAAGGAGCAGATGCGCCGTCTCACCACCAGCATCAACTCGAGCTGTGAGATTATGCA 5806 Query 776 GGCGCGGGAGCACGCCATCAAGCGCAAGATCCAGGGGTATAAGCC 820 |||||| ||||||||| | ||||||||||| |||| || ||||| Sbjct 5805 GGCGCGCGAGCACGCCCTTAAGCGCAAGATTAAGGGCTACAAGCC 5761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5529103251840