Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20higginsianum_20[genbank_20GCA_5F000313795.2_202012- 03-15] 10,235 sequences; 49,084,868 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq568 203 1e-48 >seq568 Length=17867 Score = 203 bits (224), Expect = 1e-48 Identities = 217/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| ||||| || || | || || || || || |||||| ||| ||||| Sbjct 2455 GGGACGACAGCTGCTACAGTATCAAGGGTGCGGGCACTGTATGACTTCGTCCCCACGGAA 2514 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || ||||| ||| ||| || ||||| | ||||| ||||||||||| || |||||| Sbjct 2515 CCAGGCGAACTGGAGTTCAAAAAGGGCGATGTCATTGCCGTTCTCGAGTCCGTCTACAAG 2574 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| || || || ||| |||| ||||| |||||||||||||| |||||| Sbjct 2575 GATTGGTGGCGTGGCTCGCTCAAGGGAAAGACGGGCATTTTCCCCCTCAACTACGTCGAG 2634 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| |||||| ||| ||| ||| | | | | || || ||||||||||| || || Sbjct 2635 AAGCTCACGGATCCGACCCCGGACGAGTTGGCGCGCGAGGCCCAGATGGAGGCCGAGGTG 2694 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 |||||||||||||||||||| |||||||| || | || ||||||| Sbjct 2695 TTTGCGGAGATCAAGAACGTCGAGAAGCTCCTCACGTTGTTGAGCAC 2741 Score = 109 bits (120), Expect = 2e-20 Identities = 217/315 (69%), Gaps = 11/315 (3%) Strand=Plus/Plus Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || |||||| |||| | | || | || ||||||||| ||||||||| ||||| ||| Sbjct 2846 CTTTACCACCAGACGCTAGCCATCAGACCCAAGTTGATCAAGCTCATTGAGAAGTACTCG 2905 Query 762 CAAAAGAAGGGTAAGTGGA-ATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTT 820 || || ||||||| || | || | || | ||| | |||||| | Sbjct 2906 CAGAAAAAGGGTAGGTTGCCATGAATCACACTTCCTTGGAAACCTGTCACTGAAAAATAT 2965 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 ||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| || | Sbjct 2966 GCAGATGACTTCACGCAGCTGAACGAAAAGTTTATCAAGGCTCGCCGCGACTATGAGTCT 3025 Query 881 CTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGC 940 || || ||| |||| |||||||| || | ||||| ||||| | |||| || || Sbjct 3026 CTGCTGGAATCCTCCATGTCGCACCCTCCTCAGCCTAGCTAC---CATCAA---TA-CGC 3078 Query 941 TACGGCGCCGGCGCCCCGCCG--CCTCAGAGTGCTCCGTACGGTGGCTATCCTCCTCAAG 998 ||| |||| || || | ||| | | | ||| | |||||||||||||| | Sbjct 3079 GACGAGACCGGGTCCTGGCGGATACTC-GGGCGGACCGGGAGCAGGCTATCCTCCTCAGG 3137 Query 999 GACCTCCTCAGGAAC 1013 | |||||||||| || Sbjct 3138 GTCCTCCTCAGGGAC 3152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15943814964825