Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10- 27] 1,036 sequences; 53,254,579 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq197 176 1e-40 >seq197 Length=323764 Score = 176 bits (194), Expect = 1e-40 Identities = 211/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| ||||| || || | || || || | ||||||||| |||||||| Sbjct 162567 GGCACGACAGCTGCTACGGTTTCGAGAGTGCGAGCATTATACGACTTCGTTCCCTCGGAG 162508 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| ||| || || || || | |||||||| || |||||||| |||||| Sbjct 162507 CCAGGCGAGCTGGAGTTTAAAAAGGGTGATGTCATTGCGGTGCTGGAGTCTGTCTACAAG 162448 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || || |||| || || ||||| || ||||| |||||| Sbjct 162447 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTGAACTACGTCGAG 162388 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||| || || || ||||| | | || || |||||||| || ||||| Sbjct 162387 AAGCTCACGGACCCGACTCCCGACGAGCTGGCCCGCGAGGCCCAGATGGAAGCCGAAGTG 162328 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 |||||||| ||||||||||| ||||||||||| | ||| | ||||| Sbjct 162327 TTTGCGGAAATCAAGAACGTTGAGAAGCTGCTTACGCTGTTAAGCAC 162281 Score = 86.0 bits (94), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || |||||| |||| | | || | |||||| ||||| ||||||| | ||||| ||| Sbjct 162173 CTTTACCACCAGACGCTAGCCATCAGACCGAAGCTGATCAAGCTCATCGAGAAGTACTCG 162114 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTG-GCCA---CTGATCGT 817 || ||||||||| || | | | | |||| || | |||| |||| | Sbjct 162113 CAGAAGAAGGGTCGGTCGCCACAGTCA------TTTGCTTGAGGAGCCATCACTGACCAG 162060 Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877 ||||||| ||||| ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 162059 AACGCAGATGACTTCACACAGTTGAATGAGAAGTTCATCAAGGCTCGCCGTGACTACGAG 162000 Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | | || || | || |||||||| || | ||||| ||||| Sbjct 161999 TCGTTGCTAGAGTCTTCCATGTCGCACCCTCCTCAGCCAAGCTAC 161955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945419316420