Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20incanum_20[genbank_20GCA_5F001855235.1_202016-10-
27] 1,036 sequences; 53,254,579 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq197 176 1e-40
>seq197
Length=323764
Score = 176 bits (194), Expect = 1e-40
Identities = 211/287 (74%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
|| || ||||| ||||| || || | || || || | ||||||||| ||||||||
Sbjct 162567 GGCACGACAGCTGCTACGGTTTCGAGAGTGCGAGCATTATACGACTTCGTTCCCTCGGAG 162508
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| |||||| ||| || || || || | |||||||| || |||||||| ||||||
Sbjct 162507 CCAGGCGAGCTGGAGTTTAAAAAGGGTGATGTCATTGCGGTGCTGGAGTCTGTCTACAAG 162448
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
|| |||||| |||||| || || |||| || || ||||| || ||||| ||||||
Sbjct 162447 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTGAACTACGTCGAG 162388
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
||||| ||| || || || ||||| | | || || |||||||| || |||||
Sbjct 162387 AAGCTCACGGACCCGACTCCCGACGAGCTGGCCCGCGAGGCCCAGATGGAAGCCGAAGTG 162328
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
|||||||| ||||||||||| ||||||||||| | ||| | |||||
Sbjct 162327 TTTGCGGAAATCAAGAACGTTGAGAAGCTGCTTACGCTGTTAAGCAC 162281
Score = 86.0 bits (94), Expect = 2e-13
Identities = 155/225 (69%), Gaps = 10/225 (4%)
Strand=Plus/Minus
Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761
|| |||||| |||| | | || | |||||| ||||| ||||||| | ||||| |||
Sbjct 162173 CTTTACCACCAGACGCTAGCCATCAGACCGAAGCTGATCAAGCTCATCGAGAAGTACTCG 162114
Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTG-GCCA---CTGATCGT 817
|| ||||||||| || | | | | |||| || | |||| |||| |
Sbjct 162113 CAGAAGAAGGGTCGGTCGCCACAGTCA------TTTGCTTGAGGAGCCATCACTGACCAG 162060
Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877
||||||| ||||| ||| | || ||||||||||||||||| ||||| ||||||||
Sbjct 162059 AACGCAGATGACTTCACACAGTTGAATGAGAAGTTCATCAAGGCTCGCCGTGACTACGAG 162000
Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| | || || | || |||||||| || | ||||| |||||
Sbjct 161999 TCGTTGCTAGAGTCTTCCATGTCGCACCCTCCTCAGCCAAGCTAC 161955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945419316420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |