Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201 7-02-04] 1,857 sequences; 97,411,422 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq16 167 7e-38 >seq16 Length=339932 Score = 167 bits (184), Expect = 7e-38 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 ||||| || || || |||||||| | || || || | ||||| ||| ||||| || Sbjct 270134 GGAACGACGGCTGCGACCGTCTCGAGGGTGCGAGCATTATACGATTTCGTTCCCTCAGAG 270193 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || || ||| ||| ||| || ||||| |||| || || || |||||||| ||||| Sbjct 270194 CCAGGAGAGCTGGAGTTCAAAAAGGGCGATGTTATAGCTGTGCTGGAGTCTGTCTACAAA 270253 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || || || || |||| |||||||||||| | ||||| |||||| Sbjct 270254 GACTGGTGGCGAGGATCCCTCAAGGGCAAGACGGGCATCTTCCCCTTGAACTACGTCGAG 270313 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 || || || || || || || || | | | ||||| ||||||||||| || || Sbjct 270314 AAACTCACCGACCCGACGCCCGACGAACTGGCGCGCGAAGCCCAGATGGAGGCCGAGGTG 270373 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| || |||||||||||||| ||||| || | ||||||||||| Sbjct 270374 TTTGCTGAAATCAAGAACGTGGAAAAGCTTCTCACCCTGCTGAGCAC 270420 Score = 113 bits (124), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| | || || | || || || ||| ||||| | ||||| | ||||| || Sbjct 270524 GCTCTACCACCAAACGCTGGCCATTCGCCCAAAGCTGATCAAACTCATCGAGAAGTACTC 270583 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTG---TTGGCCACTGATCGT 817 ||||||||||||| ||| |||| || | ||||| | ||| | |||| | Sbjct 270584 GCAAAAGAAGGGT--GTGTAATCCTTGCC----ATTTGACTAGAATTGCTCGCTGACCAA 270637 Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877 || | ||| |||||||| || || || || |||||||||||||| ||||| |||||||| Sbjct 270638 GTACAAGACGATTTCACCCAACTTAATGAAAAGTTCATCAAGGCTCGCCGAGACTACGAG 270697 Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || |||||| | || ||||| || || | || || ||||| Sbjct 270698 TCGCTACTTGAATCTTCCATGTCACACCCTCCCCAACCTAGCTAC 270742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945276129915