Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693015.2_20201
7-02-04] 1,857 sequences; 97,411,422 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq16 167 7e-38
>seq16
Length=339932
Score = 167 bits (184), Expect = 7e-38
Identities = 209/287 (73%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
||||| || || || |||||||| | || || || | ||||| ||| ||||| ||
Sbjct 270134 GGAACGACGGCTGCGACCGTCTCGAGGGTGCGAGCATTATACGATTTCGTTCCCTCAGAG 270193
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| || ||| ||| ||| || ||||| |||| || || || |||||||| |||||
Sbjct 270194 CCAGGAGAGCTGGAGTTCAAAAAGGGCGATGTTATAGCTGTGCTGGAGTCTGTCTACAAA 270253
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
||||||||| || || || || |||| |||||||||||| | ||||| ||||||
Sbjct 270254 GACTGGTGGCGAGGATCCCTCAAGGGCAAGACGGGCATCTTCCCCTTGAACTACGTCGAG 270313
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
|| || || || || || || || | | | ||||| ||||||||||| || ||
Sbjct 270314 AAACTCACCGACCCGACGCCCGACGAACTGGCGCGCGAAGCCCAGATGGAGGCCGAGGTG 270373
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
||||| || |||||||||||||| ||||| || | |||||||||||
Sbjct 270374 TTTGCTGAAATCAAGAACGTGGAAAAGCTTCTCACCCTGCTGAGCAC 270420
Score = 113 bits (124), Expect = 1e-21
Identities = 161/225 (72%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| | || || | || || || ||| ||||| | ||||| | ||||| ||
Sbjct 270524 GCTCTACCACCAAACGCTGGCCATTCGCCCAAAGCTGATCAAACTCATCGAGAAGTACTC 270583
Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTG---TTGGCCACTGATCGT 817
||||||||||||| ||| |||| || | ||||| | ||| | |||| |
Sbjct 270584 GCAAAAGAAGGGT--GTGTAATCCTTGCC----ATTTGACTAGAATTGCTCGCTGACCAA 270637
Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877
|| | ||| |||||||| || || || || |||||||||||||| ||||| ||||||||
Sbjct 270638 GTACAAGACGATTTCACCCAACTTAATGAAAAGTTCATCAAGGCTCGCCGAGACTACGAG 270697
Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || |||||| | || ||||| || || | || || |||||
Sbjct 270698 TCGCTACTTGAATCTTCCATGTCACACCCTCCCCAACCTAGCTAC 270742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945276129915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |