Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq62 167 7e-38 >seq62 Length=294808 Score = 167 bits (184), Expect = 7e-38 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 ||||| || || || |||||||| | || || || | ||||| ||| ||||| || Sbjct 70262 GGAACGACGGCTGCGACCGTCTCGAGGGTGCGAGCATTATACGATTTCGTTCCCTCAGAG 70321 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || || ||| ||| ||| || ||||| |||| || || || |||||||| ||||| Sbjct 70322 CCAGGAGAGCTGGAGTTCAAAAAGGGCGATGTTATAGCTGTGCTGGAGTCTGTCTACAAA 70381 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || || || || |||| |||||||||||| | ||||| |||||| Sbjct 70382 GACTGGTGGCGAGGATCCCTCAAGGGCAAGACGGGCATCTTCCCCTTGAACTACGTCGAG 70441 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 || || || || || || || || | | | ||||| ||||||||||| || || Sbjct 70442 AAACTCACCGACCCGACGCCCGACGAACTGGCGCGCGAAGCCCAGATGGAGGCCGAGGTG 70501 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| || |||||||||||||| ||||| || | ||||||||||| Sbjct 70502 TTTGCTGAAATCAAGAACGTGGAAAAGCTTCTCACCCTGCTGAGCAC 70548 Score = 113 bits (124), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| | || || | || || || ||| ||||| | ||||| | ||||| || Sbjct 70652 GCTCTACCACCAAACGCTGGCCATTCGCCCAAAGCTGATCAAACTCATCGAGAAGTACTC 70711 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTG---TTGGCCACTGATCGT 817 ||||||||||||| ||| |||| || | ||||| | ||| | |||| | Sbjct 70712 GCAAAAGAAGGGT--GTGTAATCCTTGCC----ATTTGACTAGAATTGCTCGCTGACCAA 70765 Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877 || | ||| |||||||| || || || || |||||||||||||| ||||| |||||||| Sbjct 70766 GTACAAGACGATTTCACCCAACTTAATGAAAAGTTCATCAAGGCTCGCCGAGACTACGAG 70825 Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || |||||| | || ||||| || || | || || ||||| Sbjct 70826 TCGCTACTTGAATCTTCCATGTCACACCCTCCCCAACCTAGCTAC 70870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945377459220