Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1464 165 3e-37
>seq1464
Length=99067
Score = 165 bits (182), Expect = 3e-37
Identities = 210/289 (73%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429
|||| || || || || || || || | || || || | ||||| || || || |
Sbjct 37934 CTGGCACGACGGCTGCCACGGTGTCAAGGGTGCGAGCATTATACGATTTTGTTCCTTCCG 37993
Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489
| || || || | | ||| || ||||| ||||||| || |||||||| || ||||
Sbjct 37994 AGCCGGGTGAACTCGAGTTCAAGAAGGGCGATGTTATTGCAGTCCTCGAGTCGGTTTACA 38053
Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549
|||| |||||| ||| || || ||| |||| || ||||||||||||||||| ||||
Sbjct 38054 AGGATTGGTGGCGGGGCTCGCTCAAGGGAAAGACGGGTATCTTCCCCCTCAACTACGTCG 38113
Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609
||||||| ||||| || || ||||| | | | || || |||||||||||||| |
Sbjct 38114 AGAAGCTCACAGATCCGACTCCCGATGAGCTGGCGCGTGAGGCGCAGATGGAGGCGGAGG 38173
Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
| ||||| ||||||||||| || ||||||||||| | || |||||||
Sbjct 38174 TGTTTGCAGAGATCAAGAATGTCGAGAAGCTGCTCACGCTTTTGAGCAC 38222
Score = 87.8 bits (96), Expect = 6e-14
Identities = 154/222 (69%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| | || || | || |||||||| ||||| |||| |||| ||||| ||
Sbjct 38324 GCTCTACCACCAAACGCTGGCCATCAGGCCGAAGCTGATCAAGCTTATTGAGAAGTACTC 38383
Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA--CTGATC--- 815
|| ||||||||| || | || || | | | | || || | |||| |
Sbjct 38384 CCAGAAGAAGGGTCAGAG--ATGCCCCACTCACTTGTCTATGCTGCTTATACTGACCAAG 38441
Query 816 --GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873
|||| |||||| || || ||||| || ||||||||||||||||| |||||||||||
Sbjct 38442 ATGTGT---AGATGACTTTACACAGCTGAATGAGAAGTTCATCAAGGCTCGCCGCGACTA 38498
Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915
|| | || | ||| | || |||||||| || | |||||
Sbjct 38499 TGAGTCTCTTTTGGAATCGTCCATGTCGCATCCTCCTCAGCC 38540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945115851720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |