Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq181 161 3e-36 >seq181 Length=308986 Score = 161 bits (178), Expect = 3e-36 Identities = 209/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || ||||| |||||||| || | || || || | ||||| ||| || || | Sbjct 173118 CTGGCACGACAGCTGCTACCGTGTCAAGGGTGCGAGCATTATACGATTTCGTTCCTTCCG 173177 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | || ||||| | | ||| || ||||| ||||||| || |||||||| || |||| Sbjct 173178 AGCCGGGCGAACTCGAGTTCAAGAAGGGCGATGTTATTGCAGTCCTCGAGTCGGTTTACA 173237 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| ||| || || || |||| || || ||||||||||||||||| | Sbjct 173238 AGGATTGGTGGCGGGGCTCGCTCAAGGGGAAGACAGGAATTTTCCCCCTCAACTATGTTG 173297 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||||| ||||| || || ||| | | | || || ||||||||||| || | Sbjct 173298 AGAAGCTCACAGATCCCACTCCTGATGAGTTGGCACGTGAGGCACAGATGGAGGCCGAGG 173357 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 | ||||| ||||| ||||| || ||||||||||| | || ||||||| Sbjct 173358 TGTTTGCAGAGATTAAGAATGTCGAGAAGCTGCTCACACTTTTGAGCAC 173406 Score = 87.8 bits (96), Expect = 6e-14 Identities = 137/193 (71%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 727 GGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAATCTTT 786 |||||||| ||||| |||| |||| ||||| || || ||||||||| || ||| | Sbjct 173534 GGCCGAAGCTGATCAAGCTTATTGAGAAGTACTCCCAGAAGAAGGGTTAGA--AATGCTC 173591 Query 787 TACGCGAATTTGTGTGTTGGCCA--CTGATCGTGT--TCCAGATGATTTCACGCAGCTCA 842 || || | | | || || | |||| | | ||||||| || || ||||| | Sbjct 173592 CACTCGCTTGTCTATGCTGCTTATACTGACCAAAACATGCAGATGACTTTACACAGCTGA 173651 Query 843 ACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGC 902 | |||||||| |||||||| |||||||||||||| | ||| | || | || ||||||| Sbjct 173652 ATGAGAAGTTTATCAAGGCTCGCCGCGACTACGAGTCTCTCTTGGAGTCATCCATGTCGC 173711 Query 903 AACCAGCGCAGCC 915 | || | ||||| Sbjct 173712 ATCCTCCTCAGCC 173724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945437977755