Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F000696135.1_202014- 05-27] 1,625 sequences; 46,755,813 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq973 197 4e-47 >seq973 Length=146826 Score = 197 bits (218), Expect = 4e-47 Identities = 216/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| ||||| || || | || || || || ||||| ||| ||||| || Sbjct 77806 GGCACGACAGCTGCTACGGTTTCGAGAGTGCGAGCACTATACGATTTCGTTCCCTCAGAG 77865 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| ||| ||| || ||||| | |||||||| |||||||| || |||||| Sbjct 77866 CCAGGCGAGCTGGAGTTCAAGAAGGGCGATGTCATTGCGGTGCTCGAGTCCGTTTACAAG 77925 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || || |||| || || ||||| |||||||| |||||| Sbjct 77926 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTCAACTACGTCGAG 77985 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||| || ||| || ||||| | | ||||||| |||||||| || || || Sbjct 77986 AAGCTCACGGACCCGACCCCCGATGAGCTGGCGCGAGAAGCCCAGATGGAAGCCGAGGTG 78045 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| |||||||||||||| |||||||| || | |||||||||| Sbjct 78046 TTTGCAGAGATCAAGAACGTCGAGAAGCTACTCACCTTGCTGAGCAC 78092 Score = 107 bits (118), Expect = 6e-20 Identities = 159/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| |||| || |||| | |||||| ||||| ||||||||| ||||| || Sbjct 78199 GCTTTACCACCAGACGCTGGCGATTAGACCGAAGCTGATCAAGCTCATTGAGAAGTACTC 78258 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACT---GATCGT 817 ||| ||||| ||| | | | || || | | | | |||| | || | Sbjct 78259 GCAGAAGAAAGGTGGGCAGGCCGCTATAGCCGTTCTACTCGGATAGCCATTATTGACCAC 78318 Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877 ||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 78319 AACGCAGATGATTTCACACAGCTGAACGAAAAGTTCATCAAGGCTCGCCGTGACTACGAG 78378 Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || ||||| | || |||||||| || | ||||| ||||| Sbjct 78379 TCGCTACTTGAGTCTTCCATGTCGCATCCTCCTCAGCCAAGCTAC 78423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945316591875