Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20sublineola_20[genbank_20GCA_5F001951195.1_202017-
01-13] 548 sequences; 64,848,627 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq114 197 4e-47
>seq114
Length=179700
Score = 197 bits (218), Expect = 4e-47
Identities = 216/287 (75%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
|| || ||||| ||||| || || | || || || || ||||| ||| ||||| ||
Sbjct 76612 GGCACGACAGCTGCTACGGTTTCGAGAGTGCGAGCACTATACGATTTCGTTCCCTCAGAG 76553
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| |||||| ||| ||| || ||||| | |||||||| |||||||| || ||||||
Sbjct 76552 CCAGGCGAGCTGGAGTTCAAGAAGGGCGATGTCATTGCGGTGCTCGAGTCCGTTTACAAG 76493
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
|| |||||| |||||| || || |||| || || ||||| |||||||| ||||||
Sbjct 76492 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTCAACTACGTCGAG 76433
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
||||| ||| || ||| || ||||| | | ||||||| |||||||| || || ||
Sbjct 76432 AAGCTCACGGACCCGACCCCCGATGAGCTGGCGCGAGAAGCCCAGATGGAAGCCGAGGTG 76373
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
||||| |||||||||||||| |||||||| || | ||||||||||
Sbjct 76372 TTTGCAGAGATCAAGAACGTCGAGAAGCTACTCACCTTGCTGAGCAC 76326
Score = 107 bits (118), Expect = 6e-20
Identities = 159/225 (71%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760
||| |||||| |||| || |||| | |||||| ||||| ||||||||| ||||| ||
Sbjct 76219 GCTTTACCACCAGACGCTGGCGATTAGACCGAAGCTGATCAAGCTCATTGAGAAGTACTC 76160
Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACT---GATCGT 817
||| ||||| ||| | | | || || | | | | |||| | || |
Sbjct 76159 GCAGAAGAAAGGTGGGCAGGCCGCTATAGCCGTTCTACTCGGATAGCCATTATTGACCAC 76100
Query 818 GTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAA 877
||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct 76099 AACGCAGATGATTTCACACAGCTGAACGAAAAGTTCATCAAGGCTCGCCGTGACTACGAG 76040
Query 878 ACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || ||||| | || |||||||| || | ||||| |||||
Sbjct 76039 TCGCTACTTGAGTCTTCCATGTCGCATCCTCCTCAGCCAAGCTAC 75995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945504426060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |