Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq540 188 2e-44
>seq540
Length=342251
Score = 188 bits (208), Expect = 2e-44
Identities = 214/287 (75%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
|| || ||||| || || || || | || || || | ||||||||| ||||||||
Sbjct 154904 GGCACGACAGCTGCGACGGTTTCGAGAGTGCGAGCGTTATACGACTTCGTTCCCTCGGAG 154845
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|| |||||| ||| ||| || ||||| | |||||||| || |||||||| ||||||
Sbjct 154844 CCGGGCGAGCTGGAATTCAAAAAGGGCGATGTCATTGCGGTGCTGGAGTCTGTCTACAAG 154785
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
|| |||||| |||||| || || |||| || || ||||| |||||||| ||||||
Sbjct 154784 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTCAACTACGTCGAG 154725
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
||||| ||| || || || ||||| | | | || || ||||||||||| |||||
Sbjct 154724 AAGCTCACGGACCCGACTCCCGACGAGCTGGCGCGCGAGGCCCAGATGGAGGCCGAAGTG 154665
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658
||||| || ||||||||||| ||||||||||| | ||| | |||||
Sbjct 154664 TTTGCCGAAATCAAGAACGTTGAGAAGCTGCTTACGCTGTTAAGCAC 154618
Score = 78.8 bits (86), Expect = 3e-11
Identities = 78/101 (77%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
||||||| ||||||||| | |||||||||||||||||||| || || |||||||| |
Sbjct 154394 CAGATGACTTCACGCAGTTGAACGAGAAGTTCATCAAGGCTCGTCGTGACTACGAGTCGT 154335
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || || | || ||||| || || | ||||| |||||
Sbjct 154334 TGCTAGAGTCTTCCATGTCACACCCTCCTCAGCCAAGCTAC 154294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945417572370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |