Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016- 04-19] 1,046 sequences; 52,836,184 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq540 188 2e-44 >seq540 Length=342251 Score = 188 bits (208), Expect = 2e-44 Identities = 214/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || ||||| || || || || | || || || | ||||||||| |||||||| Sbjct 154904 GGCACGACAGCTGCGACGGTTTCGAGAGTGCGAGCGTTATACGACTTCGTTCCCTCGGAG 154845 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| ||| ||| || ||||| | |||||||| || |||||||| |||||| Sbjct 154844 CCGGGCGAGCTGGAATTCAAAAAGGGCGATGTCATTGCGGTGCTGGAGTCTGTCTACAAG 154785 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| |||||| || || |||| || || ||||| |||||||| |||||| Sbjct 154784 GATTGGTGGCGGGGTTCGCTCAAGGGGAAGACGGGTATTTTCCCTCTCAACTACGTCGAG 154725 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||| || || || ||||| | | | || || ||||||||||| ||||| Sbjct 154724 AAGCTCACGGACCCGACTCCCGACGAGCTGGCGCGCGAGGCCCAGATGGAGGCCGAAGTG 154665 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| || ||||||||||| ||||||||||| | ||| | ||||| Sbjct 154664 TTTGCCGAAATCAAGAACGTTGAGAAGCTGCTTACGCTGTTAAGCAC 154618 Score = 78.8 bits (86), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 ||||||| ||||||||| | |||||||||||||||||||| || || |||||||| | Sbjct 154394 CAGATGACTTCACGCAGTTGAACGAGAAGTTCATCAAGGCTCGTCGTGACTACGAGTCGT 154335 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || || | || ||||| || || | ||||| ||||| Sbjct 154334 TGCTAGAGTCTTCCATGTCACACCCTCCTCAGCCAAGCTAC 154294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945417572370