Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elaphomyces_20granulatus_20[genbank_20GCA_5F002240705.1_202017-08-
04] 8,670 sequences; 54,153,615 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq5912 203 1e-48
>seq5912
Length=19793
Score = 203 bits (224), Expect = 1e-48
Identities = 606/920 (66%), Gaps = 29/920 (3%)
Strand=Plus/Plus
Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61
|||| ||||| | || || || || ||||| || ||||||||| | ||| | | ||
Sbjct 12225 GCAGGTCAAGTCGAAAATTCTAGAATCTATGGCGGAGTGGACGGAGTTCTTCTCTAACAA 12284
Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121
||| ||| | ||||||||||||||||| || |||| | ||||| |||||| |||
Sbjct 12285 CCCGGATTTCGGCATCATGGAGCAGGCTTACATGAAATTGAAGACGCAAAGTACGTAACT 12344
Query 122 TCAACTCTGGTTC-GTTG-GGAGCACTGACCAACGTGT-TGTAGACCCTAACCTGCGACC 178
|| || ||| | ||| || || |||||| | || | |||| || | || | ||
Sbjct 12345 ATAAGTC-GGTACTGTTCTGGCGCCCTGACCGAAGTCCATCTAGATCCCACTCTTCATCC 12403
Query 179 TCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGA 238
|| ||||| ||| ||| || || || || ||||| || ||||| ||||| ||
Sbjct 12404 CCCTTCGAAGCCTACGAAACGGCAAATTACTGAGGTTGACCGGCAAAAGGAGGAGGAAGA 12463
Query 239 GCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATC-CGCCGCCA 297
|| ||||||||||| || || || | || || | ||| | | | | |
Sbjct 12464 ACTGCAGATGGCGCTTGCTCTTTCGATAAAAGACAAACCCTCCGTAAAACCTCTAAACGA 12523
Query 298 GGTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAG-AGCAGCAT 356
| ||| | ||||| | ||| | || | ||| | |||| ||| | |
Sbjct 12524 GCCTCAAGCTGCCGCTACGTCTAGCGCAGAGTCACTTAGCCA-GCCACAACCAGCTCCCT 12582
Query 357 CA-AGC-TATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACG 414
|| ||| |||| | ||||||| || || || || || || || || | || || | |
Sbjct 12583 CACAGCCTATTCCTCCTGGAACAACTGCGGCAACTGTTTCTCGGGTGAGAGCACTGTTTG 12642
Query 415 ACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTC 474
| || ||| || || ||||| ||| | ||||| ||||| || || ||||| ||||
Sbjct 12643 ATTTTCAGCCTTCTGAGCCCGGGGAGCTTCAATTCCGGAAAGGTGATATCATTGCCGTTC 12702
Query 475 TCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCC 534
| |||||||| || || || ||||||||||| || || || || ||||| || || ||||
Sbjct 12703 TGGAGTCTGTATATAAAGATTGGTGGAAGGGCTCGCTCCGAGGGCAGACGGGAATTTTCC 12762
Query 535 CCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTC 594
| ||||| ||||| |||||||| | ||||| || ||| || || || | || || |
Sbjct 12763 CTCTCAATTATGTAGAGAAGCTACCAGATCCAACTCCGGAAGATCTGCAGCGCGAGGCAC 12822
Query 595 AGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGA 654
| |||||||| ||||| |||| | |||| || || || ||||||||| | | || |||
Sbjct 12823 AAATGGAGGCAGAAGTATTTGGGCAGATTAAAAATGTTGAGAAGCTGTTGACCCTTTTGA 12882
Query 655 GCACT---AGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACA 711
||||| || ||| | | | ||||| ||||| || || | | || |||
Sbjct 12883 GCACTAGCAGCTCGGAACTTAATGTTCAAGACAACGAGGAAATAACAGCCTTATATCACT 12942
Query 712 AGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGG 771
|| | | || | ||||| | ||||| || || || || ||||| || ||||| |
Sbjct 12943 CCACGTTAGCTATCAGACCGAAACTCATCGAACTGATAGGGAAATATTCACAGAAGAAAG 13002
Query 772 GTAAGTGGAATCTTTTACGCGAATT-TGTGTG---TTGGCCACTG---ATCGTGTTCC-A 823
||| | || | ||||| ||||| | ||| || || | || |
Sbjct 13003 GTAGG---------TTCCAAGAATTCCGTGTGGCATGAACCATTGGCTCACGCGAACCTA 13053
Query 824 GATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTC 883
||||| || || || ||||| || |||||||| || ||||| | || || ||| | |||
Sbjct 13054 GATGAATTTACACAACTCAATGAAAAGTTCATTAAAGCACGGAGGGATTATGAAGCGCTC 13113
Query 884 CTTGAAGCCTCGATGTCGCA 903
|| || || || ||||| ||
Sbjct 13114 CTAGAGGCTTCAATGTCTCA 13133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15944087908650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |