Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq787 304 4e-79 >seq787 Length=4642 Score = 304 bits (336), Expect = 4e-79 Identities = 406/560 (73%), Gaps = 21/560 (4%) Strand=Plus/Plus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || || || ||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 2182 TCAGGGACAACGGCAGCCACTGTTTCTCGTGTTCGAGCCCTGTATGACTTTCAACCCTCC 2241 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 || ||||| || | |||||||| || ||| |||| || ||||| || ||||| ||| Sbjct 2242 GAGCCCGGAGAACTCCAGTTCCGCAAGGGGGACGTTATCGCAGTTCTGGAATCTGTTTAC 2301 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 || || |||||||| |||||||||||||| || || || || || || | ||||||||| Sbjct 2302 AAAGATTGGTGGAAAGGTTCTCTGCGTGGCCAAACGGGAATATTTCCTTTAAACTATGTC 2361 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 ||||| || ||||| ||| ||||||| ||||| ||||||||||||||||| || ||| Sbjct 2362 GAGAAACTATCAGATCCAACCCAGGAGGAACTCGAAAGAGAAGCTCAGATGGAAGCTGAA 2421 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAG---CACTAGTTC- 664 || || ||||| || || |||||||||||||| | | || |||| || |||||| Sbjct 2422 GTTTTCGCGGAAATAAAAAACGTGGAGAAGCTTTTGACACTTTTGAGTACCAGTAGTTCA 2481 Query 665 GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGTCGAT 724 || | ||| | ||| || || || ||||| | |||||||| ||| || | || Sbjct 2482 GAAT-TGAACGTTCAGGAAAACGACGAAATCACAACCCTGTACCATTCGACCTTGGCCAT 2540 Query 725 ACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAG-------- 776 ||||||||| | || || | ||||| || || ||||| |||||||||||| Sbjct 2541 ACGGCCGAAACTTATTGAATTGATTGGTAAATACTCGCAGAAGAAGGGTAAGCATTTCAA 2600 Query 777 -TGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACG 835 ||| | || || | | || ||| || ||| ||| |||||| |||||| Sbjct 2601 TCCGAACCATTCACTCAA---GCAGTTTTGCTTAC--ATC--CTTCAAGATGACTTCACG 2653 Query 836 CAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCG 895 || || || || ||||||||||| || || | ||||||||| || | |||||||||||| Sbjct 2654 CAACTTAATGAAAAGTTCATCAAAGCTCGAAGAGACTACGAATCCTTGCTTGAAGCCTCG 2713 Query 896 ATGTCGCAACCAGCGCAGCC 915 ||| | || ||||||||||| Sbjct 2714 ATGGCTCATCCAGCGCAGCC 2733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944824944180