Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2 255 2e-64 >seq2 Length=2780111 Score = 255 bits (282), Expect = 2e-64 Identities = 609/896 (68%), Gaps = 41/896 (5%) Strand=Plus/Minus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| || || || | |||||| | | |||||| | | |||| ||| Sbjct 705946 TCAAGTCGAAGATTGCAGAACGAATAGCAGAATGGGCTAAAATGTTCTCGAATAACACTG 705887 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAAC 126 | || || ||||||||||| || |||| || ||| ||| |||| ||||||| | || || Sbjct 705886 AGCTGGGAATCATGGAGCAAGCATATACGAAGCTCAAGTCACAGAGTGCGTCT-AT-AAT 705829 Query 127 T---CTGGTTC--GTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCC 181 | ||| || | || | | | |||| || || ||| || || || | || || Sbjct 705828 TGGCCTGCTTGCAGCTGAGCGGA-TGACTAAAAAGTACCAGATCCAAATCTACAGCCCCC 705770 Query 182 GTCGAAACCT--CAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAG 239 | |||| || ||||| ||||||| ||| || || ||||||||||| || ||| Sbjct 705769 TCAGGCACCTACCAAAAGAC--AGATCACAGACCTTGATCGACAGAAGGAAGAAGAAGAG 705712 Query 240 CTACAGATGGCGCTGGCACTCTCCGTCAAGGA-AAGCGGGACCGAGCC--ATCCGCCGCC 296 || ||||||||||| || || || | || || | || | ||| | | | ||| Sbjct 705711 CTCCAGATGGCGCTAAAGCTATCAATCCAAGATAAACCTGAACCAGCAGGACCAACAGCC 705652 Query 297 AGGTC--CAACCAGCCGCA-AGCAAAAGCCCCACAACAATCCG--CCCCGGAACAAGA-G 350 ||| ||| | || | | ||| | || | ||| | | | | | || || | Sbjct 705651 AGGAAATCAAGC-GCTGTAGAGCTCTCGGGGCA-ACCAAGCATAACGCAGCAGCAGGAAG 705594 Query 351 CAGCATCA-AGCTA-TTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCC 408 | | ||| ||| || ||||||| | |||||||| || || ||||| || ||||| Sbjct 705593 CGCCCTCACAGCCCGTTCCATCTGGTTCTACAGCAGCCACAGTATCCCGTGTGCGCGCTT 705534 Query 409 TTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTG 468 | | |||||| || || || || || || || || || ||||| || | || | Sbjct 705533 TATTTGACTTCCAACCATCAGAGCCAGGAGAATTACAATTTCGGAAAGGAGATGTAATAG 705474 Query 469 CGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCA 528 | || || || || ||||||||||| ||||||||||| || |||| || || || || | Sbjct 705473 CAGTGCTGGAATCAGTGTACAAGGATTGGTGGAAGGGATCATTGCGAGGTCAAACTGGAA 705414 Query 529 TCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAG 588 | || || || || |||||||||||||| || || ||| | | ||||| ||| | Sbjct 705413 TATTTCCGCTGAATTATGTCGAGAAGCTTGCCGACCCGACCCAACAAGAGCTTCAGAAGG 705354 Query 589 AAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTC 648 | || ||||||||||| ||||| |||| ||||||||||| ||||| |||||||| || | Sbjct 705353 AGGCGCAGATGGAGGCCGAAGTATTTGGCGAGATCAAGAATGTGGAAAAGCTGCTGGCAC 705294 Query 649 TGCTGAGCACTAGTTCGAGTGCCG------ACGCTAGGGACAATGAGGAGATCACTTCGC 702 | || ||||| || || | || ||| | |||||||||||||||||| | Sbjct 705293 TCCTCAGCACCAG---CAGCGGCGAAATCAACGTCCGTGACAATGAGGAGATCACTGGAC 705237 Query 703 TGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGC 762 |||| || |||| | |||| || || ||| | || || |||||||| |||||| | | Sbjct 705236 TGTATCATCAGACTCTCGCGATTCGACCTAAGCTTATTGAACTCATTGGAAAGTATACAC 705177 Query 763 AAAAGAAGGGTAAG--TGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTT 820 ||||||||||| || ||| | | | | | || | | | || ||||||| | | Sbjct 705176 AAAAGAAGGGTGAGGTTGGCACCCT---CTCCTGTTCGAG-GCAGGTGACTGATCCAG-T 705122 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGA 876 |||| ||||| ||| || |||||||| || ||||| |||||| | |||||||| Sbjct 705121 GCAGACGATTTTCAGCAACTGAACGAGAAATTTATCAAAGCACGCAGGGACTACGA 705066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945593023800