Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20aotearoae_20[genbank_20GCA_5F000729855.1_202014-07-15] 2,094 sequences; 34,423,103 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq146 197 4e-47 >seq146 Length=60628 Score = 197 bits (218), Expect = 4e-47 Identities = 216/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || ||| ||| || |||||| | ||||||||| ||| || | Sbjct 25954 CTGGCACGACTGCCGCGACTGTCAGCCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 25895 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | | || ||| | | ||| || |||||| | ||||| || || ||| |||||||| Sbjct 25894 AGGCTGGTGAGCTCGAATTCAAAAAGGGCGACGTCATTGCTGTGCTAGAGAGTGTGTACA 25835 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| ||||||||| | || |||| ||||||||||| || ||||| || | Sbjct 25834 AGGATTGGTGGCGTGGTTCTCTGAGGGGCAAGACAGGCATCTTCCCGCTGAACTACGTGG 25775 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || ||||||||| || ||||| |||| || || | ||||||||| || | Sbjct 25774 AGAAGTTGACGGATCCTACGCCCGACGAGCTGCAGAGGGAGGCACGGATGGAGGCTGAGG 25715 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | ||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 25714 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGC 25668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945234795930