Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20bromicola_20[genbank_20GCA_5F001008055.1_202015-05-15] 917 sequences; 32,918,153 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq23 188 2e-44 >seq23 Length=188550 Score = 188 bits (208), Expect = 2e-44 Identities = 240/328 (73%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || ||| ||| || |||||| | ||||||||| ||| || | Sbjct 157067 CTGGCACGACTGCCGCGACTGTCAGCCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 157126 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | | || ||| | | ||| || |||||| | ||||| || || ||| |||||||| Sbjct 157127 AGGCTGGTGAGCTCGAATTCAAAAAGGGCGACGTCATTGCTGTGCTAGAGAGTGTGTACA 157186 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| |||||| || || |||| ||||||||||| || ||||| || | Sbjct 157187 AGGATTGGTGGCGTGGTTCTTTGAAGGGCAAGACGGGCATCTTCCCGCTGAACTACGTGG 157246 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || |||||| || || ||||| |||| || || ||||||||||| || | Sbjct 157247 AGAAGTTGACGGATCCCACGCCCGACGAGCTGCAGAGGGAGGCACAGATGGAGGCCGAGG 157306 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTG 669 | ||||| |||||||||||||| ||||||||||| |||| ||||| | | || Sbjct 157307 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGCGCCTCCAACACTG 157366 Query 670 C-CGACGCTAGG--GACAATGAGGAGAT 694 | | ||| ||| |||||||||||||| Sbjct 157367 CTCCCCGCGAGGAGGACAATGAGGAGAT 157394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945440070615