Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3640 188 2e-44 >seq3640 Length=177252 Score = 188 bits (208), Expect = 2e-44 Identities = 240/328 (73%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || ||| ||| || |||||| | ||||||||| ||| || | Sbjct 136092 CTGGCACGACTGCCGCGACTGTCAGCCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 136151 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | | || ||| | | ||| || ||||| | ||||| || || ||| |||||||| Sbjct 136152 AGGCTGGTGAGCTCGAGTTCAAAAAGGGCGATGTCATTGCTGTGCTAGAGAGTGTGTACA 136211 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| |||||| || || |||| ||||||||||| |||||||| || | Sbjct 136212 AGGATTGGTGGCGCGGTTCTTTGAAGGGCAAGACGGGCATCTTCCCGCTCAACTACGTGG 136271 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || |||||| || || ||||| |||| || || ||||||||||| || | Sbjct 136272 AGAAGTTGACGGATCCCACGCCCGACGAGCTGCAGAGGGAGGCACAGATGGAGGCTGAGG 136331 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTG 669 | ||||| |||||||||||||| ||||||||||| |||| ||||| | | || Sbjct 136332 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGCGCCTCCAACACTG 136391 Query 670 C-CGACGCTAGG--GACAATGAGGAGAT 694 | | ||| ||| |||||||||||||| Sbjct 136392 CTCCCCGCGAGGAGGACAATGAGGAGAT 136419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944942667555