Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20sp._20AL9924_20[genbank_20GCA_5F000729825.1_202014-07-15] 1,068 sequences; 36,169,561 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1 194 5e-46 >seq1 Length=575545 Score = 194 bits (214), Expect = 5e-46 Identities = 241/328 (73%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || ||| ||| || |||||| | ||||||||| ||| || | Sbjct 539195 CTGGCACGACTGCCGCGACTGTCAGCCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 539254 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | | || ||| | | ||| || |||||| | ||||| || || ||| |||||||| Sbjct 539255 AGGCTGGTGAGCTCGAGTTCAAAAAGGGCGACGTCATTGCTGTGCTAGAGAGTGTGTACA 539314 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| |||||| || || |||| ||||||||||| |||||||| || | Sbjct 539315 AGGATTGGTGGCGCGGTTCTTTGAAGGGCAAGACGGGCATCTTCCCGCTCAACTACGTGG 539374 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || |||||| || || ||||| |||| || || ||||||||||| || | Sbjct 539375 AGAAGTTGACGGATCCCACTCCCGACGAGCTGCAGAGGGAGGCACAGATGGAGGCTGAGG 539434 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGAGTG 669 | ||||| |||||||||||||| ||||||||||| |||| ||||| | | || Sbjct 539435 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGCGCCTCCAACACTG 539494 Query 670 C-CGACGCTAGG--GACAATGAGGAGAT 694 | | ||| ||| |||||||||||||| Sbjct 539495 CTCCCCGCGAGGAGGACAATGAGGAGAT 539522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945413735460