Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20uncinata_20[genbank_20GCA_5F001043855.1_202015-06-30] 23,102 sequences; 53,344,113 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq108 197 4e-47 seq807 185 3e-43 >seq108 Length=61966 Score = 197 bits (218), Expect = 4e-47 Identities = 216/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || |||||| ||| || |||||| | ||||||||| ||| || | Sbjct 19511 CTGGCACGACTGCCGCGACCGTCAGCCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 19452 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | |||| ||| | | ||| || |||||| | ||||| || || ||| |||||||| Sbjct 19451 AGGCCGGTGAGCTCGAGTTCAAAAAGGGCGACGTCATTGCTGTGCTGGAGAGTGTGTACA 19392 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| ||||||||| | || ||| ||||||||||| || ||||| || | Sbjct 19391 AGGATTGGTGGCGTGGTTCTCTGAGGGGCAAGAGAGGCATCTTCCCGCTGAACTACGTGG 19332 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || |||||| || || ||||| |||| || || | ||||||||| || | Sbjct 19331 AGAAGTTGACGGATCCCACGCCCGACGAGCTGCAGAGGGAGGCACGGATGGAGGCTGAGG 19272 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | ||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 19271 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGC 19225 >seq807 Length=19637 Score = 185 bits (204), Expect = 3e-43 Identities = 213/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 370 CTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGG 429 |||| || || || || || ||| || || |||||| | ||||||||| ||| || | Sbjct 13694 CTGGCACGACTGCCGCGACTGTCAGTCGAGTGCGCGCCTTGTACGACTTCGTGCCGTCCG 13635 Query 430 AACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACA 489 | | || ||| | | ||| || |||||| | ||||| || || ||| |||||||| Sbjct 13634 AGGCTGGTGAGCTCGAGTTCAAAAAGGGCGACGTCATTGCTGTGCTAGAGAGTGTGTACA 13575 Query 490 AGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCG 549 |||| |||||| |||||| || || |||| ||||||||||| || ||||| || | Sbjct 13574 AGGATTGGTGGCGTGGTTCTTTGAAGGGCAAGACGGGCATCTTCCCGCTGAACTACGTGG 13515 Query 550 AGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAG 609 ||||| || |||||| || || ||||| |||| || || ||||||||||| || | Sbjct 13514 AGAAGTTGACGGATCCCACGCCCGACGAGCTGCAGAGGGAGGCACAGATGGAGGCCGAGG 13455 Query 610 TCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | ||||| |||||||||||||| ||||||||||| |||| ||||| Sbjct 13454 TGTTTGCCGAGATCAAGAACGTCGAGAAGCTGCTGACTCTCTTGAGC 13408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15941570895690