Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epicoccum_20nigrum_20[genbank_20GCA_5F002116315.1_202017-05-01] 227 sequences; 34,744,152 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq12 423 6e-115 >seq12 Length=1018440 Score = 423 bits (468), Expect = 6e-115 Identities = 621/864 (72%), Gaps = 50/864 (6%) Strand=Plus/Minus Query 163 ACCCTAACCTGCGACCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCC 222 |||| | ||| || | || ||||| || |||||||| || ||| | || | || |||| Sbjct 198632 ACCCCAGCCTCCGCGCCCCTTCGAAGCCGCAGAAGACGCAAATCTCCGATGCCGAGCGCC 198573 Query 223 AGAAGGAAGAGGAGGAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA----AAGCGGG 278 |||| || ||||||||||| || ||||| ||||| | ||| || || ||| | | Sbjct 198572 AGAAAGAGGAGGAGGAGCTTCAAATGGCCCTGGCCATGTCCATCCGCGAGTCCAAGGGCG 198513 Query 279 ACCGAGCCATCCGCCGCCAGGTCCAACCAGCCGCAAGCAAAAGCC-CCACAACAA--TCC 335 ||| || || | || | ||||||| || |||| | ||| ||||| | ||| Sbjct 198512 -CCGCTCCCGCCACTGCAAAGTCCAACGCCCCCCAAG---ACGCCGCCACAGCCTCGTCC 198457 Query 336 GCCC---CGGAACAAG----AGCAGCATCA-AGCT------ATTGCATCTGGA-ACCACA 380 ||| | ||||||| |||| | || ||| | || | || || || Sbjct 198456 TCCCAATCCGAACAAGCACAAGCACAAGCACAGCCGGCCCCACCACAACAGGGGACAACG 198397 Query 381 GCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAG 440 || || |||||||| || || |||||||| | ||||||| |||||| || || |||||| Sbjct 198396 GCGGCCACCGTCTCGCGAGTCCGCGCCCTGTTCGACTTCCAGCCCTCCGAGCCAGGCGAG 198337 Query 441 TTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGG 500 || ||| || || ||||| || || || || ||||| |||||||||||||||||| Sbjct 198336 CTGCAGTTCAAAAAGGGAGACATCATCGCCGTGCTTGAGTCGGTGTACAAGGACTGGTGG 198277 Query 501 AAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAG 560 ||||| || || || |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 198276 AAGGGCTCGCTCCGCGGACAGACGGGCATCTTCCCGCTCAACTACGTCGAGAAGCTGCAG 198217 Query 561 GATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAG 620 || || || || ||||| ||| | || || ||||||||||| || |||||||| || Sbjct 198216 GACCCCACACGAGAAGAGCTGGAGCGCGAGGCCCAGATGGAGGCCGACGTCTTTGCTCAG 198157 Query 621 ATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCG-AGTGC-----CGAC 674 ||| ||||| ||||||||||| || ||||| ||||| || ||| || || |||| Sbjct 198156 ATCCGCAACGTCGAGAAGCTGCTGGCCCTGCTCAGCACAAGCTCGCAGGGCGGAGGCGAC 198097 Query 675 GCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAG 734 | | | ||||| ||||||||||| ||| |||||| ||| || | || ||||| ||| Sbjct 198096 GTTCGCGACAACGAGGAGATCACAGAGCTCTACCACTCGACCTTGGCCATCCGGCCCAAG 198037 Query 735 TTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAA 794 ||||| |||||||||||||| || ||||||||||||||| || | | | || | | Sbjct 198036 TTGATTGAGCTCATTGGCAAATACTCGCAAAAGAAGGGTTCGT--ATTGTCTTGTGTAGA 197979 Query 795 TTTGTGT-GTTGGCCACTGATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTC 853 | | | ||||| |||||| | | | |||| || ||||| ||| | |||||||||||| Sbjct 197978 GTACTATCGTTGGTCACTGA-CAAGCTGCAGACGACTTCACACAGTTGAACGAGAAGTTC 197920 Query 854 ATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAG 913 ||||||| ||||| ||||||||| | || ||||| || || ||| | ||| |||| ||| Sbjct 197919 ATCAAGGGTCGCCGGGACTACGAATCACTACTTGAGGCTTCCATGACACAAGCAGCCCAG 197860 Query 914 CCCGGCTACGG---TCGTCAACCCTATGGCTACGGCG-CCGGCGCCCCGCCGCCTCAGAG 969 || | ||||| ||||| | |||||| ||| | |||||||| || Sbjct 197859 CCAGCGTACGGCGCTCGTCCTGCGTATGGC----GCGTACAATGCCCCGCCACC------ 197810 Query 970 TGCTCCGTACGGTGGCTATCCTCC 993 | ||| |||||| ||||| ||||| Sbjct 197809 TTCTCAGTACGGCGGCTACCCTCC 197786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945560410065