Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702555 .1_202016-08-10] 3,634 sequences; 56,857,404 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3188 172 2e-39 >seq3188 Length=305406 Score = 172 bits (190), Expect = 2e-39 Identities = 214/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 || ||||||| ||||| || || || ||| || || || || | |||||| | || | Sbjct 187112 CAGCTGGAACTACAGCGGCCACGGTGAGCCGGGTACGTGCGCTCTTCGACTTTGCTCCTT 187053 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 | || ||||| ||| ||| ||| || || || | ||||| ||||||||| ||| | Sbjct 187052 CTGAGCCCGGAGAGCTGGAATTCAAGAAGGGTGATGTGATTGCTGTTCTCGAGAGTGTAT 186993 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 |||||||||||||| || ||||| | || |||| ||||||||||| |||||||||| Sbjct 186992 ACAAGGACTGGTGGCGAGGCTCTCTCAGGGGCAAGACTGGCATCTTCCCGCTCAACTATG 186933 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 |||| ||||| ||||| || ||| || | | | || ||||||||||| || | Sbjct 186932 TCGAAAAGCTCACCGATCCCACACCGGATGAATTACAACGCGAGGCTCAGATGGAAGCCG 186873 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 | || || || |||||||||||||| |||||||| || | | |||||||| Sbjct 186872 AGGTGTTCGCCGAGATCAAGAACGTTGAGAAGCTCCTCACGTTATTGAGCACT 186820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944966212230