Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001702575 .1_202016-08-10] 1,743 sequences; 51,983,016 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1531 172 2e-39 >seq1531 Length=29855 Score = 172 bits (190), Expect = 2e-39 Identities = 214/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 || ||||||| ||||| || || || ||| || || || || | |||||| | || | Sbjct 13609 CAGCTGGAACTACAGCGGCCACGGTGAGCCGGGTACGTGCGCTCTTCGACTTTGCTCCTT 13668 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 | || ||||| ||| ||| ||| || || || | ||||| ||||||||| ||| | Sbjct 13669 CTGAGCCCGGAGAGCTGGAATTCAAGAAGGGTGATGTGATTGCTGTTCTCGAGAGTGTAT 13728 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 |||||||||||||| || ||||| | || |||| ||||||||||| |||||||||| Sbjct 13729 ACAAGGACTGGTGGCGAGGCTCTCTCAGGGGCAAGACTGGCATCTTCCCGCTCAACTATG 13788 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 |||| ||||| ||||| || ||| || | | | || ||||||||||| || | Sbjct 13789 TCGAAAAGCTCACCGATCCCACACCGGATGAATTACAACGCGAGGCTCAGATGGAAGCCG 13848 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 | || || || |||||||||||||| |||||||| || | | |||||||| Sbjct 13849 AGGTGTTCGCCGAGATCAAGAACGTTGAGAAGCTCCTCACGTTATTGAGCACT 13901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945296012085