Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20pseudograminearum_20[genbank_20GCA_5F000974265.2_202016- 07-14] 26 sequences; 37,070,975 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2 187 8e-44 >seq2 Length=8944178 Score = 187 bits (206), Expect = 8e-44 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 ||||||||||| || || || ||| || || || || | |||||| | ||||| || Sbjct 1608854 GGAACCACAGCTGCGACAGTGAGCCGAGTGCGTGCTCTCTTCGACTTTGCACCCTCTGAG 1608913 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || || ||| | | ||| || |||||| | ||||| |||||||| ||| ||||| Sbjct 1608914 CCTGGTGAGCTTGAATTCAAGAAGGGCGACGTGATTGCTGTTCTCGAAAGTGTCTACAAA 1608973 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 || |||||| || ||||| | || |||| || || ||||| ||||||||||| ||| Sbjct 1608974 GATTGGTGGCGAGGCTCTCTCAGGGGCAAGACTGGTATTTTCCCACTCAACTATGTTGAG 1609033 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| ||||| ||| ||| ||||| || | || |||||||||||||| || || Sbjct 1609034 AAGCTTACCGATCCCACCGCGGATGAGCTGCAGCGCGAGGCTCAGATGGAGGCCGAGGTG 1609093 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 ||||| |||||||||||||| |||||||| || | |||| |||||| Sbjct 1609094 TTTGCCGAGATCAAGAACGTCGAGAAGCTTCTCACATTGCTCAGCACT 1609141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945595465470