Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq20 260 4e-66 >seq20 Length=639023 Score = 260 bits (288), Expect = 4e-66 Identities = 393/557 (71%), Gaps = 19/557 (3%) Strand=Plus/Plus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 |||| ||||| || ||||| || ||| | | || | || || | ||||||| ||||| Sbjct 6867 CATCAGGAACAACTGCAGCCACGGTCAGCAGAGTGAGAGCGCTATTCGACTTCGTGCCCT 6926 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 ||||||| || ||| | ||| | ||||| ||| | || || || ||||||| || | Sbjct 6927 CGGAACCAGGGGAGCTACAATTCAGGAAAGGTGACGTGATAGCAGTCATCGAGTCGGTTT 6986 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 |||| || |||||||| ||||| || | || ||||| ||||| |||||| | ||||| | Sbjct 6987 ACAAAGATTGGTGGAAAGGTTCATTGAGAGGCCAGACGGGCATTTTCCCCTTGAACTACG 7046 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 |||||||| ||||||| || ||| | || || | || | |||||| |||||||||| | Sbjct 7047 TCGAGAAGTTGCAGGACCCCACCCAAGAAGATTTGCAGCGTGAAGCTGAGATGGAGGCTG 7106 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGA 666 | ||||| || |||||||||| || ||||||||||| ||||| ||| ||| | | | Sbjct 7107 AGGTCTTCTCGCAGATCAAGAATGTCGAGAAGCTGCTGGCTCTACTGTCCACGAAT---A 7163 Query 667 GTGCCGACG------CTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGT 720 || ||||| | || || ||||| ||||||||| ||||||| || | Sbjct 7164 CTGGCGACGTTGGGCCAAGAGAAAATGACGAGATCACTGAATTGTACCATGCTACTCTAG 7223 Query 721 CGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGA 780 | |||||||||||| | || ||||||||||| ||||| |||| ||||| |||||| | Sbjct 7224 CCATACGGCCGAAGCTTATTGAGCTCATTGGGAAGTACACGCAGAAGAAAGGTAAGCGAG 7283 Query 781 ATCTTT--TACGCGAATTTGTGTGTTGGCCACT-GATCGTGTTCCAGATGATTTCACGCA 837 | |||| || | || || | | || | || | ||| || | ||| Sbjct 7284 AACTTTGCGACACCAA-------GTAAGACTCTCTAACGCGGAATAGACGACCTGCAGCA 7336 Query 838 GCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGAT 897 | |||||||| |||||||| || | || |||||||| | || || ||| |||| || Sbjct 7337 ATTGAACGAGAAATTCATCAAAGCCAGACGTGACTACGAGTCTCTTCTCGAAACCTCAAT 7396 Query 898 GTCGCAACCAGCGCAGC 914 | | ||| | ||||||| Sbjct 7397 GGCTCAATCTGCGCAGC 7413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945562154115