Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1149 183 1e-42 >seq1149 Length=44151 Score = 183 bits (202), Expect = 1e-42 Identities = 245/335 (73%), Gaps = 7/335 (2%) Strand=Plus/Plus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || ||||| || || || || || || |||||||| || | | || || | | || Sbjct 27092 TCCGGAACAACGGCTGCAACAGTTTCTCGCGTTCGAGCATTATTTGATTTTGAGGCTTCA 27151 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 || || | |||||| |||| ||||| || || |||||||| |||||||| ||||| ||| Sbjct 27152 GACCCTGATGAGTTGACTTTTCGCAAGGGAGATATTATTGCAGTTCTCGAATCTGTATAC 27211 Query 489 AAGGACTGGTGGAAGGG-TTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGT 547 || || ||||||||||| |||| || | ||||| ||||| ||||| || || || ||||| Sbjct 27212 AAAGATTGGTGGAAGGGCTTCT-TGAGAGGACAAACCGGAATCTTTCCACTAAATTATGT 27270 Query 548 CGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGA 607 ||||| || |||||||| ||||| || ||||||| || |||||||| || || Sbjct 27271 GGAGAAACTAGCCGATCCTACACCAGAGGAACTACAGAGAGAGGCCCAGATGGAAGCTGA 27330 Query 608 AGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTC 664 || |||||||| || ||||| || || ||||| || | || |||||| ||| ||| Sbjct 27331 GGTTTTTGCGGAAATAAAGAATGTTGAAAAGCTTCTTACGTTGTTGAGCACATCTACTTC 27390 Query 665 GAGTGC-CGACGCTAGGGACAATGAGGAGATCACT 698 | | || | | | |||| || |||||||| ||| Sbjct 27391 G-GAGCTCAATGTGCGGGATAACGAGGAGATTACT 27424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944771750655