Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq1149 183 1e-42
>seq1149
Length=44151
Score = 183 bits (202), Expect = 1e-42
Identities = 245/335 (73%), Gaps = 7/335 (2%)
Strand=Plus/Plus
Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428
|| ||||| || || || || || || |||||||| || | | || || | | ||
Sbjct 27092 TCCGGAACAACGGCTGCAACAGTTTCTCGCGTTCGAGCATTATTTGATTTTGAGGCTTCA 27151
Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488
|| || | |||||| |||| ||||| || || |||||||| |||||||| ||||| |||
Sbjct 27152 GACCCTGATGAGTTGACTTTTCGCAAGGGAGATATTATTGCAGTTCTCGAATCTGTATAC 27211
Query 489 AAGGACTGGTGGAAGGG-TTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGT 547
|| || ||||||||||| |||| || | ||||| ||||| ||||| || || || |||||
Sbjct 27212 AAAGATTGGTGGAAGGGCTTCT-TGAGAGGACAAACCGGAATCTTTCCACTAAATTATGT 27270
Query 548 CGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGA 607
||||| || |||||||| ||||| || ||||||| || |||||||| || ||
Sbjct 27271 GGAGAAACTAGCCGATCCTACACCAGAGGAACTACAGAGAGAGGCCCAGATGGAAGCTGA 27330
Query 608 AGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTC 664
|| |||||||| || ||||| || || ||||| || | || |||||| ||| |||
Sbjct 27331 GGTTTTTGCGGAAATAAAGAATGTTGAAAAGCTTCTTACGTTGTTGAGCACATCTACTTC 27390
Query 665 GAGTGC-CGACGCTAGGGACAATGAGGAGATCACT 698
| | || | | | |||| || |||||||| |||
Sbjct 27391 G-GAGCTCAATGTGCGGGATAACGAGGAGATTACT 27424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15944771750655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |