Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27]
471 sequences; 36,473,783 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq445 379 7e-102
>seq445
Length=178790
Score = 379 bits (420), Expect = 7e-102
Identities = 652/932 (70%), Gaps = 47/932 (5%)
Strand=Plus/Minus
Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68
|| |||||||| | ||||| ||||| |||||| | ||||||||| | | | || |||
Sbjct 16937 AAAGCAAAGATATTGGAGCGCATGGGAGAATGGTCTGAGATGTTCTCGCGCGATCCAGAT 16878
Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAACTC 128
|| ||||||||||| ||||| |||| ||| |||||||| |||| || || ||||
Sbjct 16877 CTCGGCATCATGGAAGGAGCCTACATGAAGCTGAAGACACAGAGTGAGT-TGTTCAAGAG 16819
Query 129 ----TGGTTCGTTGGGAGCACTGAC-CAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183
|| | || |||| |||| ||| | |||||| ||||| || | || |
Sbjct 16818 AAAGTGTGTGGTGTCGAGC--TGACACAA------GCAGACCCCAACCTTCGGGCACCAT 16767
Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243
||||||| ||||| || |||||| | || || || ||||||||||| ||||| ||||| |
Sbjct 16766 CGAAACCGCAGAAAACACAGATCTCCGATTCCGATCGCCAGAAGGAGGAGGAAGAGCTCC 16707
Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGAAAGC--GGGACCGA-GCCATCCGCCGCCAGGT 300
| ||||| || || | || ||||||| | ||| | | ||| || ||||| |
Sbjct 16706 AAATGGCACTAGCCATGTCTATCAAGGAGTCCAAGGGTGCAACGCCTTCGGCCGCGAAAG 16647
Query 301 CCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAGAGCAGCAT---C 357
| || ||| || | ||| | || ||| | | || || || || | |
Sbjct 16646 CAAATACGCCACAGGAAAACAACGCAGGC---TCCAACTCTCAAGCAGCGCCGCCTTCGC 16590
Query 358 AAGCTATTGCATCT-GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGAC 416
|| | | ||| | || || |||||||| |||||||| ||||| | ||||| | ||||
Sbjct 16589 AACCGGT-GCAGCCAGGCACTACAGCAGCAACCGTCTCGCGCGTAAGGGCCCTATTCGAC 16531
Query 417 TTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTC 476
|| ||| ||||| || || ||| || ||| || || ||||| || || || ||
Sbjct 16530 TTTCAGCCTTCGGAGCCTGGTGAGCTGCAATTCAAGAAGGGAGACATCATCGCCGTGCTG 16471
Query 477 GAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCC 536
|| || || |||||||| ||||||||||| || || |||||| | || |||||||||||
Sbjct 16470 GAATCAGTATACAAGGATTGGTGGAAGGGCTCACTCCGTGGAAACACAGGCATCTTCCCA 16411
Query 537 CTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAG 596
||||||||||| ||||||||||| || || || || || ||||||| || || |||
Sbjct 16410 CTCAACTATGTGGAGAAGCTGCAAGACCCCACTCGTGAAGAACTCGAGAAGGAGGCACAG 16351
Query 597 ATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656
| ||||| || |||||||| ||||| ||| |||||||||||||| ||||| |||||
Sbjct 16350 ACTGAGGCAGAGGTCTTTGCCCAGATCCGGAATGTGGAGAAGCTGCTTGCTCTCTTGAGC 16291
Query 657 ACTAGTTCGAGTGCCG---------ACGCTAGGGACAATGAGGAGATCACTTCGCTGTAC 707
|| | || |||| | | | | ||||| || |||||||| ||| |||
Sbjct 16290 ACGAACACGCAAGCCGGAGGGGGCGATGGTCGCGACAACGAAGAGATCACGGAGCTCTAC 16231
Query 708 CACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAG 767
|| || | | || || |||||| | |||||||| ||||| || ||||| || |||
Sbjct 16230 CATTCTACGCTTGCAATCCGTCCGAAGCTAATCGAGCTGATTGGAAAATATTCACAGAAG 16171
Query 768 AAGGGTAAGTG-GAATCT-TTTACGCGAATTTGTGTGTTGGCCA--CTGATCGTGTTCCA 823
||||||||| | ||| || | ||| || | || |||| || | | || | ||
Sbjct 16170 AAGGGTAAGCGCGAACCTATGTAC-AGA-------TTTTTGCCAGGCTAACCATGAT-CA 16120
Query 824 GATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTC 883
||||| ||||| || |||||||||||||||||||| || || || |||||||| | ||
Sbjct 16119 GATGACTTCACTCAACTCAACGAGAAGTTCATCAAAGCTCGTCGAGACTACGAGTCGCTA 16060
Query 884 CTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915
|| || || || ||||| || ||| |||| ||
Sbjct 16059 CTCGAGGCATCCATGTCACAGCCACCGCAACC 16028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945517855245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |