Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20laetus_20[genbank_20GCA_5F001414375.1_202015-10-27] 471 sequences; 36,473,783 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq445 379 7e-102 >seq445 Length=178790 Score = 379 bits (420), Expect = 7e-102 Identities = 652/932 (70%), Gaps = 47/932 (5%) Strand=Plus/Minus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 || |||||||| | ||||| ||||| |||||| | ||||||||| | | | || ||| Sbjct 16937 AAAGCAAAGATATTGGAGCGCATGGGAGAATGGTCTGAGATGTTCTCGCGCGATCCAGAT 16878 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGATCAACTC 128 || ||||||||||| ||||| |||| ||| |||||||| |||| || || |||| Sbjct 16877 CTCGGCATCATGGAAGGAGCCTACATGAAGCTGAAGACACAGAGTGAGT-TGTTCAAGAG 16819 Query 129 ----TGGTTCGTTGGGAGCACTGAC-CAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183 || | || |||| |||| ||| | |||||| ||||| || | || | Sbjct 16818 AAAGTGTGTGGTGTCGAGC--TGACACAA------GCAGACCCCAACCTTCGGGCACCAT 16767 Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 ||||||| ||||| || |||||| | || || || ||||||||||| ||||| ||||| | Sbjct 16766 CGAAACCGCAGAAAACACAGATCTCCGATTCCGATCGCCAGAAGGAGGAGGAAGAGCTCC 16707 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGAAAGC--GGGACCGA-GCCATCCGCCGCCAGGT 300 | ||||| || || | || ||||||| | ||| | | ||| || ||||| | Sbjct 16706 AAATGGCACTAGCCATGTCTATCAAGGAGTCCAAGGGTGCAACGCCTTCGGCCGCGAAAG 16647 Query 301 CCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAGAGCAGCAT---C 357 | || ||| || | ||| | || ||| | | || || || || | | Sbjct 16646 CAAATACGCCACAGGAAAACAACGCAGGC---TCCAACTCTCAAGCAGCGCCGCCTTCGC 16590 Query 358 AAGCTATTGCATCT-GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGAC 416 || | | ||| | || || |||||||| |||||||| ||||| | ||||| | |||| Sbjct 16589 AACCGGT-GCAGCCAGGCACTACAGCAGCAACCGTCTCGCGCGTAAGGGCCCTATTCGAC 16531 Query 417 TTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTC 476 || ||| ||||| || || ||| || ||| || || ||||| || || || || Sbjct 16530 TTTCAGCCTTCGGAGCCTGGTGAGCTGCAATTCAAGAAGGGAGACATCATCGCCGTGCTG 16471 Query 477 GAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCC 536 || || || |||||||| ||||||||||| || || |||||| | || ||||||||||| Sbjct 16470 GAATCAGTATACAAGGATTGGTGGAAGGGCTCACTCCGTGGAAACACAGGCATCTTCCCA 16411 Query 537 CTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAG 596 ||||||||||| ||||||||||| || || || || || ||||||| || || ||| Sbjct 16410 CTCAACTATGTGGAGAAGCTGCAAGACCCCACTCGTGAAGAACTCGAGAAGGAGGCACAG 16351 Query 597 ATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | ||||| || |||||||| ||||| ||| |||||||||||||| ||||| ||||| Sbjct 16350 ACTGAGGCAGAGGTCTTTGCCCAGATCCGGAATGTGGAGAAGCTGCTTGCTCTCTTGAGC 16291 Query 657 ACTAGTTCGAGTGCCG---------ACGCTAGGGACAATGAGGAGATCACTTCGCTGTAC 707 || | || |||| | | | | ||||| || |||||||| ||| ||| Sbjct 16290 ACGAACACGCAAGCCGGAGGGGGCGATGGTCGCGACAACGAAGAGATCACGGAGCTCTAC 16231 Query 708 CACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAG 767 || || | | || || |||||| | |||||||| ||||| || ||||| || ||| Sbjct 16230 CATTCTACGCTTGCAATCCGTCCGAAGCTAATCGAGCTGATTGGAAAATATTCACAGAAG 16171 Query 768 AAGGGTAAGTG-GAATCT-TTTACGCGAATTTGTGTGTTGGCCA--CTGATCGTGTTCCA 823 ||||||||| | ||| || | ||| || | || |||| || | | || | || Sbjct 16170 AAGGGTAAGCGCGAACCTATGTAC-AGA-------TTTTTGCCAGGCTAACCATGAT-CA 16120 Query 824 GATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTC 883 ||||| ||||| || |||||||||||||||||||| || || || |||||||| | || Sbjct 16119 GATGACTTCACTCAACTCAACGAGAAGTTCATCAAAGCTCGTCGAGACTACGAGTCGCTA 16060 Query 884 CTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 || || || || ||||| || ||| |||| || Sbjct 16059 CTCGAGGCATCCATGTCACAGCCACCGCAACC 16028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945517855245