Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Knoxdaviesia_20proteae_20[genbank_20GCA_5F001510565.1_202016-01-11] 133 sequences; 35,489,142 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq53 217 5e-53 >seq53 Length=1555449 Score = 217 bits (240), Expect = 5e-53 Identities = 248/329 (75%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || ||||| || || || || || ||||| || || || |||||||| ||| ||||| Sbjct 560563 GGCACCACCGCCGCCACGGTGTCGCGCGTACGGGCGCTGTACGACTTTGTGCCGTCGGAG 560622 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 ||||||||| ||| |||| ||||||||| || || || || || ||||| ||||||||| Sbjct 560623 CCCGGCGAGCTGGAGTTCCACAAAGGCGATATCATCGCCGTGCTGGAGTCGGTGTACAAG 560682 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || ||| || |||||||||| ||||| |||||||| |||||| Sbjct 560683 GACTGGTGGCGCGGCCTGCTGAAGGGCAAGACCGGCATTTTCCCGCTCAACTACGTCGAG 560742 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 |||||| ||||| || ||| ||||| || | || ||| |||||||||| || || Sbjct 560743 AAGCTGTCCGATCCGACGCCGGACGAGCTGCAGCGCGAGGCTGAGATGGAGGCCGAGGTG 560802 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668 ||||| || ||||| ||||| ||||||||| | | |||||||||| | || ||| | Sbjct 560803 TTTGCTGAAATCAAAAACGTCGAGAAGCTGTTGACGCTGCTGAGCACGTCGAGCTCG-GC 560861 Query 669 GCCGACGCTAGG--GACAATGAGGAGATC 695 |||| ||| ||| |||| || |||||| Sbjct 560862 GCCG-CGCGAGGACGACAGCGACGAGATC 560889 Score = 80.6 bits (88), Expect = 8e-12 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879 |||||| |||||||| || |||||||| |||||||||||||| || | ||||||||| | Sbjct 561096 TCCAGACGATTTCACCCAACTCAACGAAAAGTTCATCAAGGCCCGGAGAGACTACGAAGC 561155 Query 880 CCTCCTTGAAGCCTCGATGTCGCAACC 906 ||| || ||| | || ||| | || || Sbjct 561156 CCTGCTCGAATCGTCCATGGCCCACCC 561182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945576804135