Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasiodiplodia_20theobromae_20[genbank_20GCA_5F002111425.1_202017-04- 26] 29 sequences; 43,283,415 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1 1433 0.0 >seq1 Length=6723813 Score = 1433 bits (1588), Expect = 0.0 Identities = 1073/1258 (85%), Gaps = 2/1258 (0%) Strand=Plus/Plus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| |||||||| ||||| ||||| || ||||||||||||||| ||| | Sbjct 5920786 GCAGGTCAAGGCGAAGATCCTGGAGCGGATGGGCGAGTGGACGGAGATGTTCTCCAAGGA 5920845 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 | |||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | || Sbjct 5920846 CGCTGACCTTGGCATCATGGAGCAGGCCTACATGAGGCTCAAGACACAAAGTGCGCGGGA 5920905 Query 122 TCAACTCTGGTTCGTTGGGAGCA--CTGACCAACGTGTTGTAGACCCTAACCTGCGACCT 179 | | | || || || ||| | |||| | | | ||||||| ||||| |||||| Sbjct 5920906 TAAGCCCTCTTTTGTCGGGCACTTGCTGATTGATATTTCCTAGACCCGAACCTACGACCT 5920965 Query 180 CCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAG 239 |||||||| |||||||||||||||||||| || | ||||||||||| || ||||| ||| Sbjct 5920966 CCGTCGAAGCCTCAGAAGACCCAGATCACCGATGCCGACCGCCAGAAAGAGGAGGACGAG 5921025 Query 240 CTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCAGG 299 ||||||||||| ||||| || ||| ||||||||| ||| || |||| |||||||||||| Sbjct 5921026 CTACAGATGGCTCTGGCCCTTTCCATCAAGGAAAACGGAACTCAGCCGTCCGCCGCCAGG 5921085 Query 300 TCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAGAGCAGCATCAA 359 |||||||||||||||||||| | | |||||| | |||| ||||||||||||||| ||| Sbjct 5921086 TCCAACCAGCCGCAAGCAAACACACAACAACAGCCTGCCCAGGAACAAGAGCAGCACCAA 5921145 Query 360 GCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTC 419 ||||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||| Sbjct 5921146 CCTATTGCATCTGGAACCACAGCAGCGACCGTTTCCCGCGTTCGTGCTCTCTACGACTTC 5921205 Query 420 ACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAG 479 |||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||| Sbjct 5921206 ACGCCCTCGGAACCCGGCGAGTTGGCCTTCCGCAAGGGTGACATTATTGCGGTGCTCGAG 5921265 Query 480 TCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTC 539 |||||||||||||| ||||||||||| || ||||| |||||||| |||||||| |||||| Sbjct 5921266 TCTGTGTACAAGGATTGGTGGAAGGGCTCGCTGCGGGGACAGACTGGCATCTTTCCCCTC 5921325 Query 540 AACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATG 599 ||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||| Sbjct 5921326 AACTATGTCGAGAAGCTGCAGGACCCGACCAAGGAGGAGCTGGAGAGGGAAGCTCAGATG 5921385 Query 600 GAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 || || || |||||||| |||||||||||||||||||||||| | || || |||||||| Sbjct 5921386 GAAGCAGAGGTCTTTGCCGAGATCAAGAACGTGGAGAAGCTGTTGGCCTTGTTGAGCACT 5921445 Query 660 AGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTG 719 ||||||||||| || || ||||| |||||||||||||||||||||||||||||||| ||| Sbjct 5921446 AGTTCGAGTGCTGATGCGAGGGAAAATGAGGAGATCACTTCGCTGTACCACAAGACTGTG 5921505 Query 720 TCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGG 779 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| | Sbjct 5921506 TCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTACTCGCAGAAGAAGGGTGAGTTG 5921565 Query 780 AATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACGCAGC 839 | | || | | | || | | |||||| |||||||||| || ||||||||| Sbjct 5921566 AGGTTGTTGCACCGGATGGTTTATCAATGACTGATTGTGTTCCAGACGACTTCACGCAGT 5921625 Query 840 TCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATGT 899 | ||||||||||||||||||||||||||||| ||||| |||||||||| || || |||| Sbjct 5921626 TGAACGAGAAGTTCATCAAGGCACGCCGCGATTACGAGTCCCTCCTTGAGGCTTCTATGT 5921685 Query 900 CGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGCTACGGCGCCGGCGCCCCGC 959 ||||| |||| |||||||| |||||||| ||||| || ||||||||||| ||||| |||| Sbjct 5921686 CGCAAGCAGCACAGCCCGGTTACGGTCGCCAACCTTACGGCTACGGCGCAGGCGCACCGC 5921745 Query 960 CGCCTCAGAGTGCTCCGTACGGTGGCTATCCTCCTCAAGGACCTCCTCAGGAACAGTTTT 1019 |||||||||| |||| ||||| ||||| ||||| ||||||||||||||||| | || || Sbjct 5921746 CGCCTCAGAGCACTCCATACGGAGGCTACCCTCCGCAAGGACCTCCTCAGGATCGGTATT 5921805 Query 1020 ACTCGCCTACTCCAGCCGCAGACCAAGGCTACGGATATCCTCCTCAGAATGGGCCTCAGC 1079 |||| || |||||| ||||| ||||| |||||||||||||||||||| || || |||| Sbjct 5921806 ACTCACCCGTTCCAGCAGCAGAGCAAGGTTACGGATATCCTCCTCAGAACGGACCCCAGC 5921865 Query 1080 CCTTCACGATGGCTCAGCCCTCACAAGCACCTCCTTCTGCACAGGTGGCTAGTCCTAGAC 1139 |||| |||||||| | ||| ||||||||||||||| |||||| || |||| || | | Sbjct 5921866 CCTTTACGATGGCCCCTCCCGGACAAGCACCTCCTTCCGCACAGATGACTAGCCCCAAGC 5921925 Query 1140 CAGCGAATGGCGAGCTCTCCTACGTCCCGCAGCGCGTGCCTGTCGGTGGAAGGCCCACAT 1199 |||| |||||||| ||||||||||| ||||||||||||||||| |||||| | || || Sbjct 5921926 CAGCCAATGGCGACCTCTCCTACGTGCCGCAGCGCGTGCCTGTGGGTGGACGACCACAAT 5921985 Query 1200 CCATGGCCTTTCCCCAGGAAATGGCGGCCAACAGCCCAGTGGACTCCAGGCCGCCTCC 1257 |||||||||| |||||||||||||| |||||||| || || ||||||||||||||||| Sbjct 5921986 CCATGGCCTTCCCCCAGGAAATGGCTGCCAACAGTCCTGTCGACTCCAGGCCGCCTCC 5922043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945594942255