Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307885.1_202015-10- 07] 3,606 sequences; 45,587,513 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1695 996 0.0 >seq1695 Length=49946 Score = 996 bits (1104), Expect = 0.0 Identities = 983/1269 (77%), Gaps = 37/1269 (3%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| |||||||| ||||| |||||||||||||| |||||||| ||| | Sbjct 5870 GCAGGTCAAGGCCAAGATCCTTGAGCGCATGGGTGAATGGACCGAGATGTTTTCCAAGGA 5811 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 ||| ||||| || ||||||||||||||||| |||||||| |||||||| ||| |||| | Sbjct 5810 CCCAGATCTAGGTATCATGGAGCAGGCCTACATGAGGCTCAAGACACAGAGTACGTGGCA 5751 Query 122 TCAACTCTGGTTCGTTGGGAGCA---CTGAC-CAACGTGTTGTAGACCCTAACCTGCGAC 177 || | ||| || |||||| | |||| | | | ||| |||||||||||| || | Sbjct 5750 TCGTCCCTGATTTGTTGGGCGACTTCCTGATTCGATTTCTTGCAGACCCTAACCTTCGCC 5691 Query 178 CTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGG 237 |||||||||| || || |||||||||||||| || || |||||| ||||||||||||| Sbjct 5690 CTCCGTCGAAGCCGCAAAAGACCCAGATCACAGAGTCAGACCGCGCAAAGGAAGAGGAGG 5631 Query 238 AGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCA 297 || | |||||||| ||||| || ||| |||| || | ||| ||| | ||||| || |||| Sbjct 5630 AGTTGCAGATGGCACTGGCTCTGTCCATCAAAGAGAACGGCACCCAACCATCTGCTGCCA 5571 Query 298 GGTCCAACCAGCCGCAAGCAAAAGCCCCACAA--CAATCCGCCCCGG-AACAAGAGCAGC 354 ||||||||| || |||||||| | | ||| | ||||| | | || || |||| | Sbjct 5570 AGTCCAACCAACCCCAAGCAAATTCGGCGCAAGCCGCTCCGCAACAGCAAGAACAGCAAC 5511 Query 355 ATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACG 414 | || || ||||| |||||||| || ||||| || || ||||| || || || || |||| Sbjct 5510 ACCAGGCGATTGCTTCTGGAACTACCGCAGCCACTGTATCCCGTGTCCGTGCTCTCTACG 5451 Query 415 ACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTC 474 ||||||| || || || |||||||| ||||| ||||||||||| || || || ||||| | Sbjct 5450 ACTTCACTCCTTCCGAGCCCGGCGAATTGGCGTTCCGCAAAGGTGATATCATCGCGGTGC 5391 Query 475 TCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCC 534 | ||||| ||||||||||| ||||||||||||||| |||||||||||||||| || |||| Sbjct 5390 TTGAGTCAGTGTACAAGGATTGGTGGAAGGGTTCTTTGCGTGGACAGACCGGAATTTTCC 5331 Query 535 CCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTC 594 | ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct 5330 CTCTCAACTATGTGGAGAAGCTGCAGGATCCGACCAAGGAGGAGCTCGAAAGGGAAGCTC 5271 Query 595 AGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGA 654 |||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 5270 AGATGGAGGCCGAGGTCTTTGCAGAGATCAAGAATGTGGAGAAGCTGCTGGCTCTGCTGA 5211 Query 655 GCACTAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGA 714 |||| ||||| || || || || ||||| || |||||||| ||||||||||||||||||| Sbjct 5210 GCACGAGTTCAAGCGCGGATGCGAGGGAAAACGAGGAGATTACTTCGCTGTACCACAAGA 5151 Query 715 CAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTA 774 | || |||||||||| ||| ||||||| |||||||| |||||||| || ||||| || Sbjct 5150 CGGTTGCGATACGGCCAAAGCTGATCGAACTCATTGGGAAGTATTCTCAGAAGAAAGGCG 5091 Query 775 AGTGGAATCTTTTACGCGAATTTGTGTGTTGGC-CA--CTGATCGTGTTCCAGATGATTT 831 ||| | ||| || ||| | || | || |||| || | |||| || || Sbjct 5090 AGTATACCTGTTTTGTTGA---CGTGGGGTGCCACAAGCTGACCGGCGTACAGACGACTT 5034 Query 832 CACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGC 891 ||| ||| | |||||||||||||||||||| ||||| || |||||| ||||||| || || Sbjct 5033 CACTCAGTTGAACGAGAAGTTCATCAAGGCTCGCCGTGATTACGAAGCCCTCCTCGAGGC 4974 Query 892 CTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGCTACGGCGCCGG 951 || ||||| ||| | || || || | || || || || || ||||||||||| || | Sbjct 4973 TTCCATGTCACAAGCTGCACAACCTGCATATGGCCGCCAGCCTTATGGCTACGGTGCAGC 4914 Query 952 CGCCCCGCCGCCTCAGAGTGCTCCGTACGGTGGCTAT----------------------- 988 ||||| |||| || |||||||| |||||||||||| Sbjct 4913 TGCCCCTCCGCAGCAAAGTGCTCCATACGGTGGCTATCCTCCGCAGGGTCCTCCGCAAGG 4854 Query 989 -CCTCCTCAAGGACCTCCTCAGGAACAGTTTTACTCGCCTACTCCAGCCGCAGACCAAGG 1047 ||||||||||||||||| ||||| || ||||||||| || | ||||||||||| Sbjct 4853 ACCTCCTCAAGGACCTCCGCAGGACAGGTATTACTCGCCAGGCCCGGGGGCAGACCAAGG 4794 Query 1048 CTACGGATATCCTCCTCAGAATGGGCCTCAGCCCTTCACGATGGCTCAGCCCTCACAAGC 1107 || || || || || |||||||| |||||||||||| ||||| || || |||||| Sbjct 4793 TTATGGCTACCCGCCGCAGAATGGTGCTCAGCCCTTCATGATGGTTCCTCCAGGACAAGC 4734 Query 1108 ACCTCCTTCTGCACAGGTGGCTAGTCCTAGACCAGCGAATGGCGAGCTCTCCTACGTCCC 1167 || || | |||||| | |||| || | || ||||| ||||| | ||||| || || Sbjct 4733 TCCCCCACCCGCACAGATCACTAGCCCGAAGCCCGCGAACGGCGATCCGTCCTATGTACC 4674 Query 1168 GCAGCGCGTGCCTGTCGGTGGAAGGCCCACATCCATGGCCTTTCCCCAGGAAATGGCGGC 1227 ||||||||| || ||||||||| | ||| ||| ||||| || || || |||||||| || Sbjct 4673 GCAGCGCGTCCCGGTCGGTGGACGACCCCAATCGATGGCTTTCCCGCAAGAAATGGCAGC 4614 Query 1228 CAACAGCCC 1236 |||||| || Sbjct 4613 CAACAGTCC 4605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944971095570