Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrophomina_20phaseolina_20[genbank_20GCA_5F001307935.1_202015-10- 07] 3,651 sequences; 45,838,930 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq841 996 0.0 >seq841 Length=66253 Score = 996 bits (1104), Expect = 0.0 Identities = 983/1269 (77%), Gaps = 37/1269 (3%) Strand=Plus/Plus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| ||||||| |||||||| ||||| |||||||||||||| |||||||| ||| | Sbjct 44066 GCAGGTCAAGGCCAAGATCCTTGAGCGCATGGGTGAATGGACCGAGATGTTTTCCAAGGA 44125 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 ||| ||||| || ||||||||||||||||| |||||||| |||||||| ||| |||| | Sbjct 44126 CCCAGATCTAGGTATCATGGAGCAGGCCTACATGAGGCTCAAGACACAGAGTACGTGGCA 44185 Query 122 TCAACTCTGGTTCGTTGGGAGCA---CTGAC-CAACGTGTTGTAGACCCTAACCTGCGAC 177 || | ||| || |||||| | |||| | | | ||| |||||||||||| || | Sbjct 44186 TCGTCCCTGATTTGTTGGGCGACTTCCTGATTCGATTTCTTGCAGACCCTAACCTTCGCC 44245 Query 178 CTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGG 237 |||||||||| || || |||||||||||||| || || |||||| ||||||||||||| Sbjct 44246 CTCCGTCGAAGCCGCAAAAGACCCAGATCACAGAGTCAGACCGCGCAAAGGAAGAGGAGG 44305 Query 238 AGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCA 297 || | |||||||| ||||| || ||| |||| || | ||| ||| | ||||| || |||| Sbjct 44306 AGTTGCAGATGGCACTGGCTCTGTCCATCAAAGAGAACGGCACCCAACCATCTGCTGCCA 44365 Query 298 GGTCCAACCAGCCGCAAGCAAAAGCCCCACAA--CAATCCGCCCCGG-AACAAGAGCAGC 354 ||||||||| || |||||||| | | ||| | ||||| | | || || |||| | Sbjct 44366 AGTCCAACCAACCCCAAGCAAATTCGGCGCAAGCCGCTCCGCAACAGCAAGAACAGCAAC 44425 Query 355 ATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACG 414 | || || ||||| |||||||| || ||||| || || ||||| || || || || |||| Sbjct 44426 ACCAGGCGATTGCTTCTGGAACTACCGCAGCCACTGTATCCCGTGTCCGTGCTCTCTACG 44485 Query 415 ACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTC 474 ||||||| || || || |||||||| ||||| ||||||||||| || || || ||||| | Sbjct 44486 ACTTCACTCCTTCCGAGCCCGGCGAATTGGCGTTCCGCAAAGGTGATATCATCGCGGTGC 44545 Query 475 TCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCC 534 | ||||| ||||||||||| ||||||||||||||| |||||||||||||||| || |||| Sbjct 44546 TTGAGTCAGTGTACAAGGATTGGTGGAAGGGTTCTTTGCGTGGACAGACCGGAATTTTCC 44605 Query 535 CCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTC 594 | ||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct 44606 CTCTCAACTATGTGGAGAAGCTGCAGGATCCGACCAAGGAGGAGCTCGAAAGGGAAGCTC 44665 Query 595 AGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGA 654 |||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 44666 AGATGGAGGCCGAGGTCTTTGCAGAGATCAAGAATGTGGAGAAGCTGCTGGCTCTGCTGA 44725 Query 655 GCACTAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGA 714 |||| ||||| || || || || ||||| || |||||||| ||||||||||||||||||| Sbjct 44726 GCACGAGTTCAAGCGCGGATGCGAGGGAAAACGAGGAGATTACTTCGCTGTACCACAAGA 44785 Query 715 CAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTA 774 | || |||||||||| ||| ||||||| |||||||| |||||||| || ||||| || Sbjct 44786 CGGTTGCGATACGGCCAAAGCTGATCGAACTCATTGGGAAGTATTCTCAGAAGAAAGGCG 44845 Query 775 AGTGGAATCTTTTACGCGAATTTGTGTGTTGGC-CA--CTGATCGTGTTCCAGATGATTT 831 ||| | ||| || ||| | || | || |||| || | |||| || || Sbjct 44846 AGTATACCTGTTTTGTTGA---CGTGGGGTGCCACAAGCTGACCGGCGTACAGACGACTT 44902 Query 832 CACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGC 891 ||| ||| | |||||||||||||||||||| ||||| || |||||| ||||||| || || Sbjct 44903 CACTCAGTTGAACGAGAAGTTCATCAAGGCTCGCCGTGATTACGAAGCCCTCCTCGAGGC 44962 Query 892 CTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGCTACGGCGCCGG 951 || ||||| ||| | || || || | || || || || || ||||||||||| || | Sbjct 44963 TTCCATGTCACAAGCTGCACAACCTGCATATGGCCGCCAGCCTTATGGCTACGGTGCAGC 45022 Query 952 CGCCCCGCCGCCTCAGAGTGCTCCGTACGGTGGCTAT----------------------- 988 ||||| |||| || |||||||| |||||||||||| Sbjct 45023 TGCCCCTCCGCAGCAAAGTGCTCCATACGGTGGCTATCCTCCGCAGGGTCCTCCGCAAGG 45082 Query 989 -CCTCCTCAAGGACCTCCTCAGGAACAGTTTTACTCGCCTACTCCAGCCGCAGACCAAGG 1047 ||||||||||||||||| ||||| || ||||||||| || | ||||||||||| Sbjct 45083 ACCTCCTCAAGGACCTCCGCAGGACAGGTATTACTCGCCAGGCCCGGGGGCAGACCAAGG 45142 Query 1048 CTACGGATATCCTCCTCAGAATGGGCCTCAGCCCTTCACGATGGCTCAGCCCTCACAAGC 1107 || || || || || |||||||| |||||||||||| ||||| || || |||||| Sbjct 45143 TTATGGCTACCCGCCGCAGAATGGTGCTCAGCCCTTCATGATGGTTCCTCCAGGACAAGC 45202 Query 1108 ACCTCCTTCTGCACAGGTGGCTAGTCCTAGACCAGCGAATGGCGAGCTCTCCTACGTCCC 1167 || || | |||||| | |||| || | || ||||| ||||| | ||||| || || Sbjct 45203 TCCCCCACCCGCACAGATCACTAGCCCGAAGCCCGCGAACGGCGATCCGTCCTATGTACC 45262 Query 1168 GCAGCGCGTGCCTGTCGGTGGAAGGCCCACATCCATGGCCTTTCCCCAGGAAATGGCGGC 1227 ||||||||| || ||||||||| | ||| ||| ||||| || || || |||||||| || Sbjct 45263 GCAGCGCGTCCCGGTCGGTGGACGACCCCAATCGATGGCTTTCCCGCAAGAAATGGCAGC 45322 Query 1228 CAACAGCCC 1236 |||||| || Sbjct 45323 CAACAGTCC 45331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944963247345