Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monascus_20ruber_20[genbank_20GCA_5F900184055.1_202017-07-07] 287 sequences; 24,908,785 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq171 309 1e-80 >seq171 Length=700151 Score = 309 bits (342), Expect = 1e-80 Identities = 634/931 (68%), Gaps = 40/931 (4%) Strand=Plus/Plus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTGAT 68 ||| ||||||| ||||| ||||| || ||||||||||||||| | | ||||| || Sbjct 84574 AAGTCAAAGATTCTCGAATGTATGCAGGAGTGGACGGAGATGTTCTCTACAAACCCAGAC 84633 Query 69 CTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTG--TG-ATC-A 124 |||| || ||||||||||| ||||||| | || ||||| |||| | || || | Sbjct 84634 TTTGGAATTATGGAGCAGGCGTATATGAAATTAAAAACACAGAGTGAGCTCTTGCATGGA 84693 Query 125 ACTCTGGTTCGTTGGGA-GCACTGACCAACGTGTTGT-AGACCCTAACCTGCGACCTCCG 182 | ||| || | | | |||||| ||| | |||||| ||| ||| ||| || Sbjct 84694 AGCCTGTCTCTCTATGCTGTACTGACT----TGTCGGCAGACCCAAACTTGCAACCACCC 84749 Query 183 TCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTA 242 ||||||||| ||| | |||| || || ||||||||||| || || ||||| || Sbjct 84750 TCGAAACCTACCAAGCGCGAGATTACTGATATTGACCGCCAGAAAGAGGAAGAGGAACTG 84809 Query 243 CAGATGGCGCTGGCACTCTCCGTCAAGGA--AAGCGGGACCGAGCCATCCGCCGCCAGGT 300 ||||||||||| || || || ||| || || | | | | || | | | |||| Sbjct 84810 CAGATGGCGCTTGCTCTTTCAATCAGAGACAAATCCGCAGCACCTCAGGAGACAC-AGGT 84868 Query 301 CCA-ACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAGAG---CAGCAT 356 | | || |||| | || | | ||| | || | | ||||| ||| Sbjct 84869 CAAGACTAGCC-----CGTCAGGCTCTGAACCAGCCAGTCAAGCACAAGCAACACAGTCC 84923 Query 357 CAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGAC 416 || || | | || || || | || || ||||| || ||||| | ||| | | ||| Sbjct 84924 CAGGCAGTCCCTTCAGGTACTTCCGCTGCCACCGTTTCACGCGTCAGGGCCTTATTTGAC 84983 Query 417 TTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTC 476 || |||||| || ||||| ||| | ||||| || || || || |||||||||||| Sbjct 84984 TTTCAGCCCTCTGAGCCCGGTGAGCTTCAGTTCCGTAAGGGGGATATCATTGCGGTTCTC 85043 Query 477 GAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCC 536 || || |||||||||||||||||||| ||||||||| | || || ||||| || || || Sbjct 85044 GAATCCGTGTACAAGGACTGGTGGAAAGGTTCTCTGAGAGGCCAAACCGGAATATTTCCA 85103 Query 537 CTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAG 596 || ||||| || |||||||||| ||||| || ||| ||||| | ||||||||||| Sbjct 85104 CTTAACTACGTGGAGAAGCTGCCCGATCCAACAGTGGAAGAGCTGCAACGAGAAGCTCAG 85163 Query 597 ATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGC 656 | |||||| ||||| |||| |||| |||||||| ||||||||||| | || |||||| Sbjct 85164 ACGGAGGCCGAAGTGTTTGGCCAGATAAAGAACGTCGAGAAGCTGCTGACGCTTCTGAGC 85223 Query 657 AC---TAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAG 713 || || || | ||| | || || || || || || | || || ||| Sbjct 85224 ACACGCAGCTCTGATCTTAACGTTCAAGAGAACGAAGAAATTACAACACTATATCACTCA 85283 Query 714 ACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGT 773 || || |||| || || |||||||| || || ||||| ||||| ||||| ||||| ||| Sbjct 85284 ACTTTGGCGATTCGACCCAAGTTGATTGAACTTATTGGGAAGTACTCGCAGAAGAAAGGT 85343 Query 774 AAG-------TGGAATCT-TTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGA 825 | | | | |||| || || ||| || | | | ||| | |||| Sbjct 85344 ACGTACACCTTTGGATCTGTTGGAGCATATTCGTTTACTTACAACT-------ATGCAGA 85396 Query 826 TGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCT 885 ||| || |||||||| ||||| || ||||| || |||||| | || || ||| | || | Sbjct 85397 TGAGTTTACGCAGCTTAACGAAAAATTCATTAAAGCACGCAGGGATTATGAATCTCTTTT 85456 Query 886 TGAAGCCTCGATGTCGCAACCAGCGCAGCCC 916 || || || |||||||| || ||||||||| Sbjct 85457 GGAGGCATCCATGTCGCATCCTGCGCAGCCC 85487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945549945765