Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neonectria_20ditissima_20[genbank_20GCA_5F001305505.1_202015-10-01] 172 sequences; 44,950,817 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq96 179 1e-41 >seq96 Length=3495428 Score = 179 bits (198), Expect = 1e-41 Identities = 212/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || ||||| || || |||||| ||| ||||| || | | |||||| | ||||| || Sbjct 1256375 GGCACCACGGCTGCCACCGTCAGCCGAGTTCGTGCTCAGTTCGACTTTGCTCCCTCTGAG 1256434 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 || |||||| | | ||| || |||||| | ||||| ||||||||| ||| |||||| Sbjct 1256435 CCGGGCGAGCTCGAGTTCAAGAAGGGCGACGTCATTGCCGTTCTCGAGAGTGTTTACAAG 1256494 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || || || || || |||| || |||||||| | ||||| |||||| Sbjct 1256495 GACTGGTGGCGAGGCTCCCTACGCGGGAAGACGGGTATCTTCCCTTTGAACTACGTCGAG 1256554 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| || || || ||| || || | | || || |||||||| || || ||| Sbjct 1256555 AAGCTATCCGACCCAACTCCGGATGAACTGCAACGCGAGGCACAGATGGAAGCCGAGGTC 1256614 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| || |||||||| || ||||||||| | ||||||||||||| Sbjct 1256615 TTTGCCGAAATCAAGAATGTCGAGAAGCTGTTGACTCTGCTGAGCAC 1256661 Score = 123 bits (136), Expect = 8e-25 Identities = 165/228 (72%), Gaps = 15/228 (7%) Strand=Plus/Plus Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| | ||| | | || ||||||||| ||||| || | |||| |||||||| Sbjct 1256761 GCTTTACCACCAAACACTAGCTATCCGGCCGAAGCTGATCAAGTTGATTGAAAAGTATTC 1256820 Query 761 GCAAAAGAAGGGTAAG----TGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGAT-- 814 ||||||||||||||| || ||| | | | || ||||| || | | Sbjct 1256821 CCAAAAGAAGGGTAAGGATCTGTAATTTCTGA--------TGAGTGTTACCCCTCGCTAA 1256872 Query 815 CGTGTTCC-AGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTA 873 | | ||| ||| |||||||| ||||||||||| ||||| |||||||| || || ||||| Sbjct 1256873 CAAGCTCCCAGACGATTTCACCCAGCTCAACGAAAAGTTTATCAAGGCTCGACGGGACTA 1256932 Query 874 CGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTA 921 ||| |||||||||| |||| ||| | || || ||||||| |||| Sbjct 1256933 CGAGGCCCTCCTTGAGTCCTCTATGGCTCACCCGCCGCAGCCTAGCTA 1256980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945570002340