Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05-
14] 425 sequences; 51,710,636 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq399 387 4e-104
>seq399
Length=1013403
Score = 387 bits (428), Expect = 4e-104
Identities = 664/954 (70%), Gaps = 45/954 (5%)
Strand=Plus/Minus
Query 3 CAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAAC 62
||| |||| || ||||| | ||||| ||||| ||||||||||||||||| | | ||
Sbjct 948566 CAGGTCAAAGCTAAGATTTTGGAGCGCATGGGATCGTGGACGGAGATGTTCGCAAATGAC 948507
Query 63 CCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGAT 122
||||| || |||||||||||| ||| || |||| | | |||||||| ||| ||| ||
Sbjct 948506 CCTGACCTGGGCATCATGGAGGGGGCTTACATGAAGTTGAAGACACAGAGTAGGTG-GAC 948448
Query 123 CA--ACTCTGGTTCGTTGGGAGCA--CTGACCAACGTGTTGTAGACCCTAACCTGCGACC 178
| ||| || || | | | | |||| | |||||||||| || || |||||
Sbjct 948447 CTGTACTAGGGGTCAT-GAAAATATGCTGAGACA----TTGTAGACCCGAATCTCCGACC 948393
Query 179 TCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGA 238
|| ||||||||||| |||||||| || || ||| || |||||||||||||| |||||
Sbjct 948392 CCCTTCGAAACCTCAAAAGACCCAAATTACAGACCTTGATCGCCAGAAGGAAGAAGAGGA 948333
Query 239 GCTACAGATGGCGCTGGCACTCTCCGTCAAGGA----AAGCGGGACCGAGCCATCCGCCG 294
| |||| ||||| ||| | | ||| | | || ||| | | | | ||| || || |
Sbjct 948332 GTTACAAATGGCCCTGAAAATGTCCATACAAGACTCCAAG-GCGCCTGCGCCGTCGGCTG 948274
Query 295 CCAGGTCCAACCAGCCGCAAGCAAA-AGCCCCACAAC--AATCCGCCCCGGAACAAGAGC 351
| | || || || ||| || ||| | | | || | || | | |||| |
Sbjct 948273 CTAAATCTAATACACCACAAACAGCCAGCTCTAGTTCCGAACCAGCACAG---CAAGCAC 948217
Query 352 AGCAT---CAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCC 408
||| | ||| | | | || || || |||||||| || || ||||| || || || |
Sbjct 948216 AGCCTGCCCAACCAGTCCCCTCAGGTACTACAGCAGCAACTGTATCCCGTGTACGGGCGC 948157
Query 409 TTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTG 468
| | |||||| || || ||||| |||||| || || || ||||| || |||||||
Sbjct 948156 TATTCGACTTTCAACCTTCAGAACCGGGCGAGCTGCAATTTCGGAAAGGAGATATTATTG 948097
Query 469 CGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCA 528
| || || ||||| || |||||||| ||||||||||| || || || || || || || |
Sbjct 948096 CCGTGCTGGAGTCGGTATACAAGGATTGGTGGAAGGGATCGCTTCGAGGGCAAACTGGTA 948037
Query 529 TCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAG 588
||||||| | ||||| || |||||||| ||||| || || || ||||| ||||| |
Sbjct 948036 TCTTCCCATTGAACTACGTTGAGAAGCTACAGGACCCAACGCGAGAAGAGCTGGAGAGGG 947977
Query 589 AAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTC 648
|||| ||||||||||||||||| |||||| |||| || ||||||||| |||| || |
Sbjct 947976 AAGCACAGATGGAGGCGGAAGTATTTGCGCAGATTCGAAATGTGGAGAAGTTGCTCGCAC 947917
Query 649 TGCTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTT 699
| ||||||| || || | | | || | | || ||||||||||| ||
Sbjct 947916 TCTTGAGCACCAGCTCGCAAACAGGGGGAGGGGATGTCCGTGATAATGAGGAGATTACAG 947857
Query 700 CGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATT 759
|||||| || ||| |||| |||||||| |||||||| ||||||||||| || || |
Sbjct 947856 AGCTGTATCATTCAACATTGTCAATACGGCCCAAGTTGATTGAGCTCATTGGGAAATACT 947797
Query 760 CGCAAAAGAAGGGTAAGT---GGAATCTTTTACGCGAA-TTTGTGTGTTGGCCACTGATC 815
|||| ||||||||||||| | | | | || | || | | | |||
Sbjct 947796 CGCAGAAGAAGGGTAAGTCTCGTGACCAGGCCTACAAACCCCGAGTACTAACAAATGA-- 947739
Query 816 GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACG 875
|||| |||||||| || || ||||||||||||||||| || ||||| ||||| |
Sbjct 947738 ------CAGACGATTTCACCCAACTGAACGAGAAGTTCATCAAAGCCCGCCGAGACTATG 947685
Query 876 AAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTC 929
|| |||| || || || || ||||| || || ||| || | || || ||||
Sbjct 947684 AATCCCTGCTCGAGGCATCCATGTCTCAGCCGCAGCAACCAGCTTATGGCCGTC 947631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945525877875
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |