Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nigrograna_20mackinnonii_20[genbank_20GCA_5F001007845.1_202015-05- 14] 425 sequences; 51,710,636 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq399 387 4e-104 >seq399 Length=1013403 Score = 387 bits (428), Expect = 4e-104 Identities = 664/954 (70%), Gaps = 45/954 (5%) Strand=Plus/Minus Query 3 CAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAAC 62 ||| |||| || ||||| | ||||| ||||| ||||||||||||||||| | | || Sbjct 948566 CAGGTCAAAGCTAAGATTTTGGAGCGCATGGGATCGTGGACGGAGATGTTCGCAAATGAC 948507 Query 63 CCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGAT 122 ||||| || |||||||||||| ||| || |||| | | |||||||| ||| ||| || Sbjct 948506 CCTGACCTGGGCATCATGGAGGGGGCTTACATGAAGTTGAAGACACAGAGTAGGTG-GAC 948448 Query 123 CA--ACTCTGGTTCGTTGGGAGCA--CTGACCAACGTGTTGTAGACCCTAACCTGCGACC 178 | ||| || || | | | | |||| | |||||||||| || || ||||| Sbjct 948447 CTGTACTAGGGGTCAT-GAAAATATGCTGAGACA----TTGTAGACCCGAATCTCCGACC 948393 Query 179 TCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGA 238 || ||||||||||| |||||||| || || ||| || |||||||||||||| ||||| Sbjct 948392 CCCTTCGAAACCTCAAAAGACCCAAATTACAGACCTTGATCGCCAGAAGGAAGAAGAGGA 948333 Query 239 GCTACAGATGGCGCTGGCACTCTCCGTCAAGGA----AAGCGGGACCGAGCCATCCGCCG 294 | |||| ||||| ||| | | ||| | | || ||| | | | | ||| || || | Sbjct 948332 GTTACAAATGGCCCTGAAAATGTCCATACAAGACTCCAAG-GCGCCTGCGCCGTCGGCTG 948274 Query 295 CCAGGTCCAACCAGCCGCAAGCAAA-AGCCCCACAAC--AATCCGCCCCGGAACAAGAGC 351 | | || || || ||| || ||| | | | || | || | | |||| | Sbjct 948273 CTAAATCTAATACACCACAAACAGCCAGCTCTAGTTCCGAACCAGCACAG---CAAGCAC 948217 Query 352 AGCAT---CAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCC 408 ||| | ||| | | | || || || |||||||| || || ||||| || || || | Sbjct 948216 AGCCTGCCCAACCAGTCCCCTCAGGTACTACAGCAGCAACTGTATCCCGTGTACGGGCGC 948157 Query 409 TTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTG 468 | | |||||| || || ||||| |||||| || || || ||||| || ||||||| Sbjct 948156 TATTCGACTTTCAACCTTCAGAACCGGGCGAGCTGCAATTTCGGAAAGGAGATATTATTG 948097 Query 469 CGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCA 528 | || || ||||| || |||||||| ||||||||||| || || || || || || || | Sbjct 948096 CCGTGCTGGAGTCGGTATACAAGGATTGGTGGAAGGGATCGCTTCGAGGGCAAACTGGTA 948037 Query 529 TCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAG 588 ||||||| | ||||| || |||||||| ||||| || || || ||||| ||||| | Sbjct 948036 TCTTCCCATTGAACTACGTTGAGAAGCTACAGGACCCAACGCGAGAAGAGCTGGAGAGGG 947977 Query 589 AAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTC 648 |||| ||||||||||||||||| |||||| |||| || ||||||||| |||| || | Sbjct 947976 AAGCACAGATGGAGGCGGAAGTATTTGCGCAGATTCGAAATGTGGAGAAGTTGCTCGCAC 947917 Query 649 TGCTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTT 699 | ||||||| || || | | | || | | || ||||||||||| || Sbjct 947916 TCTTGAGCACCAGCTCGCAAACAGGGGGAGGGGATGTCCGTGATAATGAGGAGATTACAG 947857 Query 700 CGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATT 759 |||||| || ||| |||| |||||||| |||||||| ||||||||||| || || | Sbjct 947856 AGCTGTATCATTCAACATTGTCAATACGGCCCAAGTTGATTGAGCTCATTGGGAAATACT 947797 Query 760 CGCAAAAGAAGGGTAAGT---GGAATCTTTTACGCGAA-TTTGTGTGTTGGCCACTGATC 815 |||| ||||||||||||| | | | | || | || | | | ||| Sbjct 947796 CGCAGAAGAAGGGTAAGTCTCGTGACCAGGCCTACAAACCCCGAGTACTAACAAATGA-- 947739 Query 816 GTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACG 875 |||| |||||||| || || ||||||||||||||||| || ||||| ||||| | Sbjct 947738 ------CAGACGATTTCACCCAACTGAACGAGAAGTTCATCAAAGCCCGCCGAGACTATG 947685 Query 876 AAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTC 929 || |||| || || || || ||||| || || ||| || | || || |||| Sbjct 947684 AATCCCTGCTCGAGGCATCCATGTCTCAGCCGCAGCAACCAGCTTATGGCCGTC 947631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945525877875