Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq262 444 2e-121 >seq262 Length=408809 Score = 444 bits (492), Expect = 2e-121 Identities = 671/945 (71%), Gaps = 68/945 (7%) Strand=Plus/Plus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||||| ||||| || ||||| |||| || ||||| ||||||||| | | |||| | Sbjct 248301 TCAAGGCCAAGATACTAGAGCGCATGGCAGAGTGGACCGAGATGTTCTCGCGCGACCCGG 248360 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTG-TGATCAA 125 |||||||||||||| | || ||||||| ||| |||||||| ||| || |||| | Sbjct 248361 ATCTTGGCATCATGTCGGGCGCATATATGAAGCTGAAGACACAGAGTAGGTCATGATGCA 248420 Query 126 CTCTGGTTCGTTGGGAGCACTGACCAACGTGTTG-------TAGACCCTAACCTGCGACC 178 | || | || ||| |||||| || ||||||| || |||||| | Sbjct 248421 ATTTGAT--------AGTACT---CAACGTACTGATATGACTAGACCCAAATCTGCGAGC 248469 Query 179 TCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGA 238 || || |||||||||||||| || ||| ||||| || ||||||||||| |||||||| Sbjct 248470 GCCATCCAAACCTCAGAAGACACAAATCTCGGACCTCGATCGCCAGAAGGAGGAGGAGGA 248529 Query 239 GCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCAG 298 || || |||||||| || | || ||||||| | || || | ||||| Sbjct 248530 ACTGCAAATGGCGCTTGCCATGTCGATCAAGGA------GTCCAAG------GGCGCCAC 248577 Query 299 GTCCAACCAGCCGC--AAGCAAAAGCCCCACAACAATCC-GCCCCGGAACAAGAGC---- 351 ||||| |||||| ||||||| || ||||| | || | | |||| || | Sbjct 248578 A-CCAAC-AGCCGCGAAAGCAAATGCGCCACAGGACTCGAGTGCAGGAAGCAGTTCGCAA 248635 Query 352 --------AGCATCA-AGCTATTGCA-TCTGGAACCACAGCAGCTACCGTCTCCCGCGTT 401 | | || ||| | || || || || || || || ||||| ||||||||| Sbjct 248636 CCCGCCCAACCCTCGCAGCCCGTACAATCAGGCACAACCGCCGCGACCGTTTCCCGCGTT 248695 Query 402 CGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGAC 461 || || || | ||||||| ||| || ||||||||||||||| ||| || || ||| Sbjct 248696 CGAGCGCTATTCGACTTCCAGCCATCCGAACCCGGCGAGTTGCAGTTCAAGAAGGGTGAC 248755 Query 462 ATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAG 521 || |||||||| |||||||| || |||||||||||||||||||| || |||||||| ||| Sbjct 248756 ATCATTGCGGTGCTCGAGTCGGTTTACAAGGACTGGTGGAAGGGCTCACTGCGTGGTCAG 248815 Query 522 ACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTC 581 || ||||||||||| |||||||| |||||||||||||||||||| || |||||||| Sbjct 248816 ACGGGCATCTTCCCGCTCAACTACGTCGAGAAGCTGCAGGATCCGACGCGCGAGGAGCTT 248875 Query 582 GAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTG 641 |||| || || |||| || || ||||| |||||| | || ||||||||||||| || Sbjct 248876 GAGAAGGAGGCACAGACCGAAGCTGAAGTGTTTGCGCAAATACGGAACGTGGAGAAGTTG 248935 Query 642 CTAGCTCTGCTGAGCACTAGTTC----GAGTGCCGACGCTA-----GGGACAATGAGGAG 692 || || ||||||||||| | | | || || || | | ||||| ||||| Sbjct 248936 CTCGCACTGCTGAGCACAAACACACAAGCTGGCGGAGGCAATGACCGCGACAACGAGGAA 248995 Query 693 ATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGC 752 || ||| ||| |||||| || || | || || |||||| | || ||||| ||||| Sbjct 248996 ATTACTGAGCTCTACCACTCAACGCTGGCTATTCGTCCGAAGCTCATTGAGCTAATTGGG 249055 Query 753 AAGTATTCGCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCA--C 810 ||||| ||||| |||||||||||| | | | | | || | || |||| | Sbjct 249056 AAGTACTCGCAGAAGAAGGGTAAGCCAAGACAT---CTCAAA---GGACATTTGCCATGC 249109 Query 811 TGATCGTGTTCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGA 870 ||| | | |||||||||||| ||||| | |||||||||||||||||||| ||||| || Sbjct 249110 TGA-CATCATCCAGATGATTTTACGCAATTGAACGAGAAGTTCATCAAGGCTCGCCGAGA 249168 Query 871 CTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 ||| ||| | | || || || || |||||||| ||| | || || Sbjct 249169 CTATGAATCATTACTAGAGGCATCAATGTCGCAGCCACCTCAACC 249213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945499542720