Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3 260 4e-66 >seq3 Length=5002383 Score = 260 bits (288), Expect = 4e-66 Identities = 635/946 (67%), Gaps = 47/946 (5%) Strand=Plus/Plus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| || ||||| |||| |||||||| ||||||||| | ||||| | Sbjct 1001617 TCAAGTCTAAGATTCTAGAGCGCATGGAAGAATGGACTGAGATGTTCTCATCCAACCCGG 1001676 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGAT-CAA 125 || ||||||||||||| ||||| || |||| | || || |||| || | | | | Sbjct 1001677 ATTTTGGCATCATGGAACAGGCATACATGAAATTAAAAACCACAAGTAAGTATCTTTCTA 1001736 Query 126 C-TCTGGTTCGTTGGGAGC-ACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183 | || | | || || ||||| | | || |||||| || |||| || |||| Sbjct 1001737 CGTCCTATACTCCGGACGCGACTGATTA---TATTACAGACCCGAATCTGCAGCCACCGT 1001793 Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 |||||||| ||| ||||||| ||| || || |||| ||| |||||||| | | Sbjct 1001794 CGAAACCTGGAAAGCGTGAGATCACCGACGTCGATCGTCAGATGGAGGAGGAGGAATTGC 1001853 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGA--AAGCGGGACCGA--GC--CATCCGCCGC-- 295 ||||||| |||| ||||| | ||||| |||| |||| || | || || || Sbjct 1001854 AGATGGCTTTGGCCCTCTCGATTAAGGATAAAGCAACACCGGCGGCTGCTTCTGCGGCAG 1001913 Query 296 CAGGTCCAAC-----------CAGCCGCAA--GCAAAAGCCCCA----CAACAATCCGCC 338 || || | | | || || ||| || || | |||| || Sbjct 1001914 CACCTCGAGCTGAGGCTCCTTCTGCTGCTGTTGCATCGGCATCAGCTGCCACAACCCAAG 1001973 Query 339 CCGGAACAAGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGC 398 ||| | | || |||| || | || || || | | ||| ||||| || || Sbjct 1001974 G-GGAGCCCGCCGAGACTCAACCTGCTCTCTCAGGCACATCGGTAGCGACCGTGTCGCGT 1002032 Query 399 GTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGC 458 || | || || | ||||||| || || || || || ||| | |||||||| ||| Sbjct 1002033 GTGAGAGCGCTGTTCGACTTCCAACCGTCCGAGCCAGGAGAGCTTCAATTCCGCAAGGGC 1002092 Query 459 GACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGA 518 || | ||||| || || |||||||| |||||||| |||||||||||||||||| | || Sbjct 1002093 GATACCATTGCAGTCCTGGAGTCTGTTTACAAGGATTGGTGGAAGGGTTCTCTGAGAGGC 1002152 Query 519 CAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAG 578 |||||||| || ||||| ||||||||||| ||||| || | || || || || ||| Sbjct 1002153 CAGACCGGAATTTTCCCTCTCAACTATGTGGAGAAACTCCCAGACCCCACTGTCGATGAG 1002212 Query 579 CTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAG 638 | || | || ||||| ||||||||||| ||||||| ||||||||| || |||||| Sbjct 1002213 TTGCAGCGGGAGGCTCAAATGGAGGCGGACGTCTTTGGCCAGATCAAGAGTGTTGAGAAG 1002272 Query 639 CTGCTAGCTCTGCTGAGCACTAGTTCGAGTGCCGA-CGCTAGG-----GACAATGAGGAG 692 || || |||| || ||||| | | | | || | | | | || || || ||| Sbjct 1002273 CTCCTGACTCTACTAAGCACCCG---CAATACAGATCTCAATGTCCAAGAGAACGAAGAG 1002329 Query 693 ATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGC 752 || ||| | || || || || | | || ||||| || | ||||| | ||||| Sbjct 1002330 ATTACTACACTCTATCAAGCTACGCTTGCCATTCGGCCAAAACTCATCGAATTGATTGGA 1002389 Query 753 AAGTATTCGCAAAAGAAGGGTAAGTGG--AATCTTTTACGCGAATTTGTGTGTTGGCCAC 810 || |||||||||||||| ||||| | | || ||| | | ||| || | | Sbjct 1002390 AAATATTCGCAAAAGAAAGGTAATCAGCCAGTCGTTT--GTTACACCGTGGATTTCCGGC 1002447 Query 811 TGATCGTGT-TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCG 869 | | ||||| | |||||| ||||| |||||||| || |||||||||||||| || |||| Sbjct 1002448 TTA-CGTGTGTTTAGATGAATTCACCCAGCTCAATGAAAAGTTCATCAAGGCTCGTCGCG 1002506 Query 870 ACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 |||| || |||||||||| || ||| | | || || |||||||| Sbjct 1002507 ACTATGAGTCCCTCCTTGAGGCATCGCTAGCCCATCCGGCGCAGCC 1002552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945597209520