Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq108 260 4e-66 >seq108 Length=51688 Score = 260 bits (288), Expect = 4e-66 Identities = 635/946 (67%), Gaps = 47/946 (5%) Strand=Plus/Minus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | ||||| || ||||| |||| |||||||| ||||||||| | ||||| | Sbjct 11329 TCAAGTCTAAGATTCTAGAGCGCATGGAAGAATGGACTGAGATGTTCTCATCCAACCCGG 11270 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGAT-CAA 125 || ||||||||||||| ||||| || |||| | || || |||| || | | | | Sbjct 11269 ATTTTGGCATCATGGAACAGGCATACATGAAATTAAAAACCACAAGTAAGTATCTTTCTA 11210 Query 126 C-TCTGGTTCGTTGGGAGC-ACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGT 183 | || | | || || ||||| | | || |||||| || |||| || |||| Sbjct 11209 CGTCCTATACTCCGGACGCGACTGATTA---TATTACAGACCCGAATCTGCAGCCACCGT 11153 Query 184 CGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 |||||||| ||| ||||||| ||| || || |||| ||| |||||||| | | Sbjct 11152 CGAAACCTGGAAAGCGTGAGATCACCGACGTCGATCGTCAGATGGAGGAGGAGGAATTGC 11093 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGA--AAGCGGGACCGA--GC--CATCCGCCGC-- 295 ||||||| |||| ||||| | ||||| |||| |||| || | || || || Sbjct 11092 AGATGGCTTTGGCCCTCTCGATTAAGGATAAAGCAACACCGGCGGCTGCTTCTGCGGCAG 11033 Query 296 CAGGTCCAAC-----------CAGCCGCAA--GCAAAAGCCCCA----CAACAATCCGCC 338 || || | | | || || ||| || || | |||| || Sbjct 11032 CACCTCGAGCTGAGGCTCCTTCTGCTGCTGTTGCATCGGCATCAGCTGCCACAACCCAAG 10973 Query 339 CCGGAACAAGAGCAGCATCAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGC 398 ||| | | || |||| || | || || || | | ||| ||||| || || Sbjct 10972 G-GGAGCCCGCCGAGACTCAACCTGCTCTCTCAGGCACATCGGTAGCGACCGTGTCGCGT 10914 Query 399 GTTCGCGCCCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGC 458 || | || || | ||||||| || || || || || ||| | |||||||| ||| Sbjct 10913 GTGAGAGCGCTGTTCGACTTCCAACCGTCCGAGCCAGGAGAGCTTCAATTCCGCAAGGGC 10854 Query 459 GACATTATTGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGA 518 || | ||||| || || |||||||| |||||||| |||||||||||||||||| | || Sbjct 10853 GATACCATTGCAGTCCTGGAGTCTGTTTACAAGGATTGGTGGAAGGGTTCTCTGAGAGGC 10794 Query 519 CAGACCGGCATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAG 578 |||||||| || ||||| ||||||||||| ||||| || | || || || || ||| Sbjct 10793 CAGACCGGAATTTTCCCTCTCAACTATGTGGAGAAACTCCCAGACCCCACTGTCGATGAG 10734 Query 579 CTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAG 638 | || | || ||||| ||||||||||| ||||||| ||||||||| || |||||| Sbjct 10733 TTGCAGCGGGAGGCTCAAATGGAGGCGGACGTCTTTGGCCAGATCAAGAGTGTTGAGAAG 10674 Query 639 CTGCTAGCTCTGCTGAGCACTAGTTCGAGTGCCGA-CGCTAGG-----GACAATGAGGAG 692 || || |||| || ||||| | | | | || | | | | || || || ||| Sbjct 10673 CTCCTGACTCTACTAAGCACCCG---CAATACAGATCTCAATGTCCAAGAGAACGAAGAG 10617 Query 693 ATCACTTCGCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGC 752 || ||| | || || || || | | || ||||| || | ||||| | ||||| Sbjct 10616 ATTACTACACTCTATCAAGCTACGCTTGCCATTCGGCCAAAACTCATCGAATTGATTGGA 10557 Query 753 AAGTATTCGCAAAAGAAGGGTAAGTGG--AATCTTTTACGCGAATTTGTGTGTTGGCCAC 810 || |||||||||||||| ||||| | | || ||| | | ||| || | | Sbjct 10556 AAATATTCGCAAAAGAAAGGTAATCAGCCAGTCGTTT--GTTACACCGTGGATTTCCGGC 10499 Query 811 TGATCGTGT-TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCG 869 | | ||||| | |||||| ||||| |||||||| || |||||||||||||| || |||| Sbjct 10498 TTA-CGTGTGTTTAGATGAATTCACCCAGCTCAATGAAAAGTTCATCAAGGCTCGTCGCG 10440 Query 870 ACTACGAAACCCTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCC 915 |||| || |||||||||| || ||| | | || || |||||||| Sbjct 10439 ACTATGAGTCCCTCCTTGAGGCATCGCTAGCCCATCCGGCGCAGCC 10394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945396294960