Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phialophora_20attae_20[genbank_20GCA_5F001299255.1_202015-09-25] 131 sequences; 30,363,635 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq41 311 3e-81 >seq41 Length=800738 Score = 311 bits (344), Expect = 3e-81 Identities = 631/912 (69%), Gaps = 45/912 (5%) Strand=Plus/Plus Query 7 TCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAACCCTG 66 ||||| | |||||||| ||||| |||| |||||||| |||||||| | | |||| ||| Sbjct 716717 TCAAGTCCAAGATCCTTGAGCGAATGGACGAATGGACCAAGATGTTCTCGAATAACACTG 716776 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGT-GTGATCAA 125 | || ||||| |||||||| || | ||| |||| || || |||| ||| | | ||| Sbjct 716777 AGCTGGGCATTATGGAGCAAGCATTCATGCGGCTCAAATCATCAAGTACGTTGCGTTCA- 716835 Query 126 CTCTGGTTCGTTGGGAGCACTG-ACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGTC 184 | | | | ||| | || || | ||| ||| || ||||| | || ||| Sbjct 716836 --CAAG--CCATCACAGCCCAATACTAATG-GTTC-AGATCCAAACCTACAGCCACCGCA 716889 Query 185 GAAACCTCAGAAGACC-CAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTAC 243 | ||| ||||| | || ||||| | | || || || |||||| |||||||| | Sbjct 716890 GGCACC-CAGAAAGCAGCAAATCACACAGTACGATCGTCAACGGGAAGAAGAGGAGCTGC 716948 Query 244 AGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCAGGTC-- 301 |||||||| || ||| || | |||| | |||| |||||| | || || Sbjct 716949 AGATGGCGTTGAAACTGTCGATTCAGGACA---------AGCCGTCCGCCCCTAG-TCAA 716998 Query 302 CAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAA---CAAG-AGCAGC--- 354 || || | ||| ||| | || || || | | | ||| |||| | Sbjct 716999 CAGCCTGGCGCC-GCAGAGCTGTCAGGGCAGTCGAACTCAAATACTCAATCAGCAACTGT 717057 Query 355 ATCA-AGCTATTGCA-TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTA 412 |||| ||| | |||| || || || || ||||| || |||||||| || || ||| | | Sbjct 717058 ATCACAGCCAGTGCAGTCCGGCACAACCGCAGCGACTGTCTCCCGTGTCCGGGCCTTGTT 717117 Query 413 CGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGT 472 ||| ||| ||| |||||||| |||||| | ||| | ||||| || | ||| || || Sbjct 717118 CGATTTCCAGCCATCGGAACCAGGCGAGCTTCAATTCAGGAAAGGAGATACTATCGCCGT 717177 Query 473 TCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTT 532 ||| ||||| || ||||| || ||||||||||| || ||||| || |||||||||||||| Sbjct 717178 TCTTGAGTCGGTATACAAAGATTGGTGGAAGGGCTCGCTGCGAGGCCAGACCGGCATCTT 717237 Query 533 CCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGC 592 ||| ||||||||||| || ||| |||||||||| || || ||||| |||| || || Sbjct 717238 CCCTCTCAACTATGTTGAAAAGTTGCAGGATCCGACAGCAGATGAGCTGCAGAGGGAGGC 717297 Query 593 TCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCT 652 |||| || ||||||||||||| | ||||| || || |||||| |||| || || || Sbjct 717298 ACAGACCGAAGCGGAAGTCTTTGGTCAAATCAAAAATGTTGAGAAGTTGCTGGCACTTCT 717357 Query 653 GAGCACTAGTTCGAGTGCCGAC-GC--TAGGGACAATGAGGAGATCACTTCGCTGTACCA 709 |||| | || || | || | || | | ||||| ||||||||||| ||||| | Sbjct 717358 GAGCGTCAACTCAAGCGACGTCAGCAGTCGCGACAACGAGGAGATCACAGAATTGTACAA 717417 Query 710 CAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAA 769 |||| |||||||| | |||||||||||||| | ||||| ||||| | || ||||| Sbjct 717418 TCAGACGCTGTCGATAAGACCGAAGTTGATCGAATTGATTGGAAAGTACACACAGAAGAA 717477 Query 770 GGGTAAG-TGGAATCTTTTACGCGA--ATTTGTGTGTTGGCCACTGATCGTGTTCCAGAT 826 |||||| ||| | |||| | | | || |||| |||| | | ||||| Sbjct 717478 AGGTAAGCAGGACCACCTCACGCCACGAGATCGGT-TTGG---CTGACCTCCT--CAGAT 717531 Query 827 GATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTT 886 |||||| || ||||||||||| |||||||||||| | |||||||| || | | || Sbjct 717532 GATTTCCAACAACTCAACGAGAAATTCATCAAGGCAAGACGCGACTATGAGTCTATGCTG 717591 Query 887 GAAGCCTCGATG 898 || || |||||| Sbjct 717592 GAGGCGTCGATG 717603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945577152945