Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoma_20herbarum_20[genbank_20GCA_5F001599375.1_202016-03-01] 218 sequences; 39,263,577 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq25 450 4e-123 >seq25 Length=545876 Score = 450 bits (498), Expect = 4e-123 Identities = 691/968 (71%), Gaps = 37/968 (4%) Strand=Plus/Plus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGC-CAGTA 60 |||| ||||||| |||||||| ||||| ||| | || ||| ||||||||||| | ||| | Sbjct 429122 GCAGGTCAAGGCCAAGATCCTTGAGCGCATGAGCGAGTGGTCGGAGATGTTCTCGCAGGA 429181 Query 61 ACCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGT-GT 119 ||| || || || || ||| || || || | | ||| ||| | || ||| || || Sbjct 429182 -CCCAGACCTGGGGATTATGCAGGGCGCATACAACAAGCTGAAGTCGCAGAGTATGTCGT 429240 Query 120 GATCAACTCT--GGTTCGT-TGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGA 176 || ||| | | | || ||| || | || | | || |||||||||||| || Sbjct 429241 GA--AACCCAAAGCTGCGCATGGCAGAGTTAACAATC----TGCAGACCCTAACCTTCGC 429294 Query 177 CCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAG 236 | || |||||||| |||||||| |||||| | || || || ||||| || ||||| ||| Sbjct 429295 GCCCCTTCGAAACCACAGAAGACACAGATCTCCGAGTCCGAACGCCAAAAAGAAGAAGAG 429354 Query 237 GAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGA----AAGCGGGACCGAGCCATCCGC 292 || ||||||||||| |||| | ||| | || ||| | | | | || | | Sbjct 429355 GAACTACAGATGGCTTTGGCCATGTCCATACGAGAGTCCAAGGGCG-CTGCTCCCGCATC 429413 Query 293 CGCCAGGTCCAACCAGCCGCAAG-CAAAAGCCCCACAACAATC-CGCCC-CGGAACAAGA 349 ||| | ||| ||| || |||| || |||| | | | || | | ||| | Sbjct 429414 CGCGAAGTCGAACGCTCCTCAAGACACAAGCGCTGGTGCTGGCTCGAGCTCACAACCCGC 429473 Query 350 GCAGCATCAAGCTATTGCATCT---GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGC 406 |||| || || || || || || || ||||| || ||||| || || ||||| Sbjct 429474 CCAGCCCCAGGCGCCAGCGCCTCAAGGCACGACCGCAGCAACAGTCTCACGAGTACGCGC 429533 Query 407 CCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTAT 466 | ||||||||| ||| || || || ||||||||| ||| || || ||||| || Sbjct 429534 ATTGTACGACTTCCAGCCTTCAGAGCCTGGCGAGTTGCAGTTCAAGAAGGGTGACATCAT 429593 Query 467 TGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGG 526 ||| || |||||||| ||||||||||||||||||||||| || || ||||||||||| || Sbjct 429594 TGCCGTGCTCGAGTCAGTGTACAAGGACTGGTGGAAGGGATCACTACGTGGACAGACTGG 429653 Query 527 CATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAG 586 || ||||| |||||||| ||||||||||||||||| ||||| || ||||| ||||| Sbjct 429654 TATTTTCCCGCTCAACTACGTCGAGAAGCTGCAGGACCCTACACGAGAAGAGCTGGAGAG 429713 Query 587 AGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGC 646 ||| || ||||||||||| || ||||||||| | |||| ||||| ||||||||||| || Sbjct 429714 AGAGGCGCAGATGGAGGCCGAGGTCTTTGCGCAAATCAGAAACGTTGAGAAGCTGCTTGC 429773 Query 647 TCTGCTGAGCACTAGTTC-----GA-GTGCCGACGCTAGGGACAATGAGGAGATCACTTC 700 ||||| ||||| || || || ||| |||| | ||||| ||||||||||| Sbjct 429774 GCTGCTCAGCACGAGCTCACAAGGAGGTGGTGACGTGCGCGACAACGAGGAGATCACAGA 429833 Query 701 GCTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTC 760 ||| |||||| ||| || | || |||||||| |||| ||||| ||||| ||||| || Sbjct 429834 GCTCTACCACTCGACGTTGGCCATCAGGCCGAAGCTGATTGAGCTGATTGGGAAGTACTC 429893 Query 761 GCAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTT 820 ||| |||||||||| || | | | | | ||| || | || ||||| | ||| Sbjct 429894 GCAGAAGAAGGGTATGT----TTTATAAAGTGAACACGTTGAATAGCTACTGA-CCAGTT 429948 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 |||| || ||||| || || || |||||||||||||||| || || ||||||||| | Sbjct 429949 GCAGACGACTTCACACAACTGAATGAGAAGTTCATCAAGGGTCGACGAGACTACGAATCG 430008 Query 881 CTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGC 940 ||||| ||||| |||||| | ||| | ||||| | | |||||| | | || |||| Sbjct 430009 CTCCTCGAAGCTTCGATGACACAAGCTGCGCAATCAGCGTACGGTGGCCGTCC---TGGC 430065 Query 941 TACGGCGC 948 |||||||| Sbjct 430066 TACGGCGC 430073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945561979710