Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq6 405 2e-109 >seq6 Length=1708680 Score = 405 bits (448), Expect = 2e-109 Identities = 650/926 (70%), Gaps = 42/926 (5%) Strand=Plus/Minus Query 3 CAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAAC 62 ||| ||||||| |||||| | ||||| |||| |||||||| || |||||| | || || Sbjct 893916 CAGGTCAAGGCCAAGATCTTGGAGCGCATGGCAGAATGGACAGAAATGTTCTCAAGAGAC 893857 Query 63 CCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGAT 122 |||||||| || || ||| | || || |||| ||| ||| | || |||| ||| | Sbjct 893856 CCTGATCTGGGTATTATGTCGGGTGCATACATGAAGCTGAAGTCGCAGAGTGAGTGACGT 893797 Query 123 CAACTCTGGTTCGTTGGGAG---CA---CTGACCAACGTGTTGTAGACCCTAACCTGCGA 176 |||| || || || || ||||| ||| ||||| || ||||| || Sbjct 893796 AAACTT------GTAGGAAGTTCCAAATCTGAC-----TGTCGTAGATCCCAACCTTCGC 893748 Query 177 CCTCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAG 236 | || ||||| || || ||||| ||||| | ||| | ||||||||||| || |||||| Sbjct 893747 GCACCATCGAAGCCCCAAAAGACACAGATATCCGACACTGACCGCCAGAAAGAGGAGGAG 893688 Query 237 GAGCTACAGATGGCGCTGGCACTCTCCGTCAAGGAA---AGCGGGACCGAGCCATCCGCC 293 |||||||| ||||| | ||| | || | | || | ||| | | ||| | || Sbjct 893687 GAGCTACAAATGGCATTAGCAATGTCGATAAGAGAGTCTAAAGGGGCGGCTCCAACTGCT 893628 Query 294 GCCAGGTCCAACCAGCCGCAAGCAAAAGCCCCACAACAATCCGCCCCGGAACAAGAGCAG 353 || | |||| || || | |||| ||| || || | ||| | ||| Sbjct 893627 GCAAAAGCCAATACTCCCCAGG---AAGCTGGCCAAAGTTCTGCAGCTCAACCCGCACAG 893571 Query 354 CAT---CAAGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTT 410 | | ||| | || |||| || || || || || || || || || || || ||| | Sbjct 893570 CCTTTGCAACCAATGCCATCGGGCACAACTGCTGCGACTGTTTCTCGTGTGCGAGCCTTG 893511 Query 411 TACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCG 470 | ||||||| || || || |||||||| || ||||||||||| ||||||||||| Sbjct 893510 TTCGACTTCCAACCTTCTGAGCCCGGCGAACTGCAATTCCGCAAAGGTGACATTATTGCT 893451 Query 471 GTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATC 530 |||||||| || || ||||||||||||||||| || || |||||||||||||| |||||| Sbjct 893450 GTTCTCGAATCAGTATACAAGGACTGGTGGAAAGGATCGCTGCGTGGACAGACAGGCATC 893391 Query 531 TTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAA 590 ||||| |||||||||||||||||||||||||| || || ||| ||| | |||| ||| Sbjct 893390 TTCCCTCTCAACTATGTCGAGAAGCTGCAGGACCCGACTCGGGAAGAGTTGGAGAAGGAA 893331 Query 591 GCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTG 650 || || |||||||| || || || ||| | |||| ||||||||| |||||||| || ||| Sbjct 893330 GCACATATGGAGGCCGAGGTTTTCGCGCAAATCAGGAACGTGGAAAAGCTGCTTGCACTG 893271 Query 651 CTGAGCACTAGTTC---------GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCG 701 || ||||| || || ||| || | | | || || ||||||||||| | Sbjct 893270 CTCAGCACCAGCTCACAGCCAGGTGGTGGTGATGTTCGTGATAACGAGGAGATCACAGAG 893211 Query 702 CTGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCG 761 || |||||| ||| | | || |||| ||| | ||||| || ||||| ||||| ||| Sbjct 893210 CTATACCACTCAACACTAGCTATCAGGCCCAAGCTCATCGAACTTATTGGGAAGTACTCG 893151 Query 762 CAAAAGAAGGGTAAGTGGAATCTTTTACGCGAATTTGTGTGT-TGGCCACTGATCGTGTT 820 || ||||| |||| || || | | | || | || | || | | | | ||||| Sbjct 893150 CAGAAGAAAGGTATGT-ATGTCCATGA-TCACATCTCAGTATATGACTAAT--TTGTGTT 893095 Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 |||||| ||||||||| | |||||||| ||||||||||| || || ||||||||| | Sbjct 893094 --AGATGACTTCACGCAGTTGAACGAGAAATTCATCAAGGCTCGTCGGGACTACGAATCA 893037 Query 881 CTCCTTGAAGCCTCGATGTCGCAACC 906 | || ||||| || ||||| || || Sbjct 893036 ATGCTCGAAGCTTCAATGTCCCAGCC 893011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945587966055