Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20antarcticum_20[genbank_20GCA_5F002077065.1_20201 7-04-03] 267 sequences; 47,410,550 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq146 279 2e-71 seq184 273 7e-70 >seq146 Length=780984 Score = 279 bits (308), Expect = 2e-71 Identities = 394/548 (72%), Gaps = 17/548 (3%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || || || ||| ||||| | ||||| || ||||||||||| || || Sbjct 615723 GGGACTACGGCTGCGACTGTCAGTCGCGTGAGGGCCCTGTATGACTTCACGCCTTCCGAG 615664 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 | |||||| |||| || || |||||||||||| || | ||| ||||||||| Sbjct 615663 GCAGGCGAGCTGGCGTTTAAGAAGAACGACATTATTGCTGTGTTGGAGAGTGTGTACAAA 615604 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 |||||||||||||| |||||| || ||||| || ||||| || || |||||||| ||| Sbjct 615603 GACTGGTGGAAGGGAAGTCTGCGAGGGCAGACTGGTATCTTTCCGCTGAACTATGTGGAG 615544 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||||| |||||||||||||||| ||||| ||| | || || | |||||| |||| || Sbjct 615543 AAGCTCAAGGATCCTACCAAGGAAGAGCTGGAGCGGGATGCCGACATGGAGTCGGAGGTG 615484 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC---TAGTTCGAGT 668 |||| || ||| |||||| |||||| |||| || ||||||||||| | | ||| Sbjct 615483 TTTGGCGAAGTCAGGAACGTCGAGAAGTTGCTTGCGCTGCTGAGCACAGAGACTGGCAGT 615424 Query 669 GCC------GACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGTGTCG 722 | | | | ||||| | || |||||| | ||||| || | ||||||| Sbjct 615423 GGCAGGCGAGGGGAGAGGGAGGAAGACGAGATCGCGGACCTGTATCAGAGGACAGTGAGC 615364 Query 723 ATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAAT 782 ||||| ||||||||| | ||||| || || ||||| ||||| ||||| ||| ||| ||| Sbjct 615363 ATACGACCGAAGTTGGTGGAGCTGATCGGGAAGTACTCGCAGAAGAAAGGTGAGTTCAAT 615304 Query 783 -CT---TTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACGCAG 838 || ||| |||| ||| || | ||||| | |||| || ||||| || Sbjct 615303 GCTGTAATTATGCGA--GTGTATGACAG-TACTGA-CAATCAGCAGACGACTTCACACAA 615248 Query 839 CTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATG 898 | ||||||||||||||||||||| | || || ||||| | | || |||||||| ||| Sbjct 615247 TTGAACGAGAAGTTCATCAAGGCAAGACGGGATTACGAGGCATTACTCGAAGCCTCAATG 615188 Query 899 TCGCAACC 906 ||||| || Sbjct 615187 TCGCAGCC 615180 >seq184 Length=1511567 Score = 273 bits (302), Expect = 7e-70 Identities = 395/549 (72%), Gaps = 19/549 (3%) Strand=Plus/Minus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || || || ||| ||||| | || | || ||||| ||||| || || Sbjct 226435 GGGACTACGGCTGCGACGGTCAGTCGCGTGAGGGCATTATATGACTTTACGCCTTCCGAG 226376 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 | |||||| |||| ||| || |||||| ||||| || | ||| |||||||||| Sbjct 226375 GCAGGCGAGCTGGCGTTCAAGAAGAACGACATCATTGCCGTGTTGGAGAGTGTGTACAAG 226316 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 |||||||||||||| |||||| || ||||| || |||||||| || |||||||| ||| Sbjct 226315 GACTGGTGGAAGGGAAGTCTGCGAGGGCAGACGGGTATCTTCCCGCTGAACTATGTGGAG 226256 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||| || |||||||||||||||| ||||| ||| | || || | |||||| | || ||| Sbjct 226255 AAGTTGAAGGATCCTACCAAGGAAGAGCTTGAGCGGGATGCCGACATGGAGTCCGAGGTC 226196 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC---TAGTTCGAGT 668 || | ||| ||| || |||||||||||||| || || ||||||| | | ||| Sbjct 226195 TTCGGTGAGGTCAGAAATGTGGAGAAGCTGCTTGCGCTATTGAGCACAGAGACTGGTAGT 226136 Query 669 GCCGACGCTA-GGGACAATGAGG-AGATCACTTCGC-----TGTACCACAAGACAGTGTC 721 | | | || | |||| | |||| ||| | |||| |||| || | ||| ||| Sbjct 226135 GGC-AGGCGAGGGGAGAGGGAGGAAGACGAGATCGCCGACTTGTATCAGAGGACTGTGAG 226077 Query 722 GATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAA 781 ||||||||||||||| | ||| | ||||| ||||| ||||| ||||| ||| || | Sbjct 226076 CATACGGCCGAAGTTGGTGGAGTTGATTGGGAAGTACTCGCAGAAGAAAGGTGAGCTCCA 226017 Query 782 TCT----TTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACGCA 837 | | |||| |||| ||| || | ||||| | |||| || ||||| || Sbjct 226016 TGTTGTGTTTATGCGA--GTGTATGACAG-TACTGA-CAATCAGCAGACGACTTCACACA 225961 Query 838 GCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGAT 897 || |||||||||||||||||||| || || |||||||| | || || |||||||| || Sbjct 225960 ACTGAACGAGAAGTTCATCAAGGCCCGTCGAGACTACGAGGCACTACTCGAAGCCTCAAT 225901 Query 898 GTCGCAACC 906 |||||| || Sbjct 225900 GTCGCAGCC 225892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945553433865