Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2 273 7e-70 >seq2 Length=2712501 Score = 273 bits (302), Expect = 7e-70 Identities = 395/549 (72%), Gaps = 19/549 (3%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || || || ||| ||||| | || | || ||||| ||||| || || Sbjct 2321547 GGGACTACGGCTGCGACAGTCAGTCGCGTGAGGGCATTATATGACTTTACGCCTTCCGAG 2321606 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 | |||||| |||| ||| || |||||| ||||| || | ||| |||||||||| Sbjct 2321607 GCAGGCGAGCTGGCGTTCAAGAAGAACGACATCATTGCCGTGTTGGAGAGTGTGTACAAG 2321666 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 |||||||||||||| |||||| || ||||| || |||||||| || |||||||| ||| Sbjct 2321667 GACTGGTGGAAGGGAAGTCTGCGAGGGCAGACGGGTATCTTCCCGCTGAACTATGTGGAG 2321726 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||| || |||||||||||||||| ||||| ||| | || || | |||||| | || ||| Sbjct 2321727 AAGTTGAAGGATCCTACCAAGGAAGAGCTTGAGCGGGATGCCGACATGGAGTCCGAGGTC 2321786 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC---TAGTTCGAGT 668 || | ||| ||| || |||||||||||||| || || ||||||| | | ||| Sbjct 2321787 TTCGGTGAGGTCAGAAATGTGGAGAAGCTGCTTGCGCTATTGAGCACAGAGACTGGTAGT 2321846 Query 669 GCCGACGCTA-GGGACAATGAGG-AGATCACTTCGC-----TGTACCACAAGACAGTGTC 721 | | | || | |||| | |||| ||| | |||| |||| || | ||| ||| Sbjct 2321847 GGC-AGGCGAGGGGAGAGGGAGGAAGACGAGATCGCCGACTTGTATCAGAGGACTGTGAG 2321905 Query 722 GATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAA 781 || |||||||||||| | ||| | ||||| ||||| ||||| ||||| ||| || | Sbjct 2321906 CATCCGGCCGAAGTTGGTGGAGTTGATTGGGAAGTACTCGCAGAAGAAAGGTGAGCTCCA 2321965 Query 782 TCT----TTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACGCA 837 | | |||| |||| ||| || | ||||| | |||| || ||||| || Sbjct 2321966 TGTTGTGTTTATGCGA--GTGTATGACAG-TACTGA-CAATCAGCAGACGACTTCACACA 2322021 Query 838 GCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGAT 897 || ||||||||||||||||||||||| || |||||||| | || || |||||||| || Sbjct 2322022 ACTGAACGAGAAGTTCATCAAGGCACGTCGAGACTACGAGGCACTACTCGAAGCCTCAAT 2322081 Query 898 GTCGCAACC 906 |||||| || Sbjct 2322082 GTCGCAGCC 2322090 Score = 260 bits (288), Expect = 4e-66 Identities = 391/548 (71%), Gaps = 17/548 (3%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || || || || || || ||| ||||| | || | || ||||| ||||| || || Sbjct 2251170 GGGACTACGGCTGCGACAGTCAGTCGCGTGAGGGCGTTATATGACTTTACGCCTTCCGAG 2251229 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 | |||||| |||| ||| || |||||| ||||| || | || ||| |||||| Sbjct 2251230 GCAGGCGAGCTGGCGTTCAAGAAGAACGACATCATTGCCGTATTGGAAAGTGTATACAAG 2251289 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 |||||||||||||| |||||| || ||||| || |||||||| || |||||||| ||| Sbjct 2251290 GACTGGTGGAAGGGAAGTCTGCGAGGGCAGACGGGTATCTTCCCGCTGAACTATGTGGAG 2251349 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 ||| || | |||||||||||||| ||||| ||| | || || | |||||| | || ||| Sbjct 2251350 AAGTTGAAAGATCCTACCAAGGAAGAGCTGGAGCGGGATGCCGACATGGAGTCCGAGGTC 2251409 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC---TAGTTCGAGT 668 || | ||| ||| || |||||||||||||| || || ||||||| | | ||| Sbjct 2251410 TTCGGTGAGGTCAGAAATGTGGAGAAGCTGCTTGCGCTATTGAGCACAGAGACTGGTAGT 2251469 Query 669 GCCGACGCTAGG-GACAATGAGG-AGATCACTTCGC-----TGTACCACAAGACAGTGTC 721 | | | || ||| || | |||| ||| | |||| |||| || | ||| ||| Sbjct 2251470 GGC-AGGCGAGGAGAGAGGGAGGAAGACGAGATCGCCGACTTGTATCAGAGGACTGTGAG 2251528 Query 722 GATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTGGAA 781 ||||||||||||||| | || | ||||| ||||| ||||| ||||| ||| || || Sbjct 2251529 CATACGGCCGAAGTTGGTGGAATTGATTGGGAAGTACTCGCAGAAGAAAGGTGAGCTCAA 2251588 Query 782 TCTTTTACGCGAATTTGTGTGTTGGCC---ACTGATCGTGTTCCAGATGATTTCACGCAG 838 | | || | || | |||| | | ||||| | | |||| || ||||| || Sbjct 2251589 TGCTGTATTC--ATGCGAGTGTACGACAGTACTGA-CAAGCAGCAGACGACTTCACACAA 2251645 Query 839 CTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGATG 898 | ||||||||||||||||| ||||| || |||||||| | || || |||||||||||| Sbjct 2251646 TTGAACGAGAAGTTCATCAAAGCACGTCGAGACTACGAGGCACTACTCGAAGCCTCGATG 2251705 Query 899 TCGCAACC 906 ||||| || Sbjct 2251706 TCGCAGCC 2251713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945559538040