Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq3 161 3e-36 >seq3 Length=3655701 Score = 161 bits (178), Expect = 3e-36 Identities = 206/284 (73%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 ||| |||| || || || || ||||| || ||||| || | ||||| | |||| || Sbjct 1043446 GGATCCACGGCGGCCACGGTGTCCCGGGTGCGCGCGCTCTTTGACTTTGCCGCCTCCGAG 1043505 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 |||| |||| | | ||| || |||||| | ||||| || || || || |||||| Sbjct 1043506 CCCGACGAGCTCGACTTCAAGAAGGGCGACGTGATTGCCGTGCTGGAATCCGTGTACCGT 1043565 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || ||||| || | || |||||||||||||||||||| || ||| Sbjct 1043566 GACTGGTGGCGCGGCTCTCTCAAGGGCCGCACGGGCATCTTCCCCCTCAACTACGTGGAG 1043625 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 | ||| || || || ||| ||||| || | || || ||||||||||| ||||| Sbjct 1043626 ATCCTGGCCGACCCGACGCCGGACGAGCTGCAGCGTGAGGCGCAGATGGAGGCCGAAGTG 1043685 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAG 655 ||||| ||||| ||||| || ||||||||||| | || ||||| Sbjct 1043686 TTTGCCGAGATTAAGAATGTCGAGAAGCTGCTGACGCTCCTGAG 1043729 Score = 84.2 bits (92), Expect = 7e-13 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 821 CCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACC 880 ||||| || || || || || |||||||||||||||||||| |||||||||||||| | Sbjct 1043962 CCAGACGACTTTACCCAACTGAACGAGAAGTTCATCAAGGCTCGCCGCGACTACGAGTCT 1044021 Query 881 CTCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTA 921 || | || |||||||| | || || ||||||| |||| Sbjct 1044022 CTGTTGGAGTCCTCGATGGCCCACCCGCCGCAGCCGAGCTA 1044062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945595465470