Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ramalina_20peruviana_20[genbank_20GCA_5F001956345.1_202017-01-18] 1,657 sequences; 26,990,446 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq568 376 8e-101 >seq568 Length=694821 Score = 376 bits (416), Expect = 8e-101 Identities = 651/928 (70%), Gaps = 40/928 (4%) Strand=Plus/Minus Query 2 GCAGATCAAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTCGCCAGTAA 61 |||| | |||| ||||| | ||||| ||||| ||||||||||||||||||||||| | Sbjct 222866 GCAGGTGAAGGGGAAGATATTGGAGCGCATGGGAGAATGGACGGAGATGTTCGCCAGGGA 222807 Query 62 CCCTGATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA 121 || ||||| || |||||||| |||||||| | ||||| |||| ||||||| | Sbjct 222806 TCCAGATCTGGGTATCATGGATCAGGCCTACAACAGGCTCAAGAGCCAAAGTGAGCCC-- 222749 Query 122 TCA-ACTCTGGTTCGTTGGGAGCACTGACCAA--CGTGTTGTAGACCCTAACCTGCGACC 178 ||| | | || || | || || | || |||||| |||||| ||||||| || Sbjct 222748 TCATAGTATG--TCAATCAAGGCCATG-CTAATCCGTGTTCAAGACCCCAACCTGCAGCC 222692 Query 179 TCCGTCGAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGA 238 ||| || ||||| |||| || || || ||| ||| || |||||||| ||||| || Sbjct 222691 TCCATCAAAACCGACGAAGCGGCAAATTACCGACGTGGATCGGCAGAAGGAGGAGGAAGA 222632 Query 239 GCTACAGATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCG--CCGCC 296 | || ||||| ||||| ||||| ||||| || | || || ||||| || || | Sbjct 222631 ATTGCAAATGGCTCTGGCCCTCTCGGTCAAAGACAA--GGCCCCAGCCAACCAATCCTCG 222574 Query 297 AGGTCCAACCAGCCGCAAGCAAAAGCCCCACAA---CAATCCGCCCCGGAACAAGAGCAG 353 || ||| | |||||| | || || | | | | | | | | ||||| Sbjct 222573 AG---CAAGAAA--GCAAGCCCCGGACCTTCAGTGTCTACCGGTGCAGTGCCGAAAGCAG 222519 Query 354 CATCA----AGCTATTGCATCT---GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGC 406 | | ||| | ||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 222518 CGCCGGTGCAGCCA--GCATCCCAAGGAACTACAGCAGCAACAGTCTCACGCGTCCGCGC 222461 Query 407 CCTTTACGACTTCACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTAT 466 ||| | ||| ||| |||||||||| |||| ||| | || |||||||| ||||| || Sbjct 222460 CCTGTTCGATTTCGTGCCCTCGGAAGCCGGTGAGCTTCAATTTCGCAAAGGTGACATAAT 222401 Query 467 TGCGGTTCTCGAGTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGG 526 || || | ||||| || ||||| || ||||||||||| |||||| || ||||| || Sbjct 222400 CGCAGTCTTGGAGTCGGTCTACAAAGATTGGTGGAAGGGCTCTCTGAAAGGGCAGACTGG 222341 Query 527 CATCTTCCCCCTCAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAG 586 |||||| || |||||||||||||||||||| ||| || ||| | || | | || | Sbjct 222340 CATCTTTCCGCTCAACTATGTCGAGAAGCTCGCGGACCCGACCCAAGATCAATTGCAGCG 222281 Query 587 AGAAGCTCAGATGGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGC 646 || || || ||||| || || || |||| |||||||||||||| ||||||||| | | Sbjct 222280 CGAGGCCCAAATGGAAGCAGAGGTTTTTGGCGAGATCAAGAACGTCGAGAAGCTGTTGAC 222221 Query 647 TCTGCTGAGCACTAGT---TC-GAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGC 702 ||||| || || ||| || |||| |||| || ||||||||||||||||| || Sbjct 222220 CCTGCTCAGTACCAGTGGGTCGGAGT-TGGACGTGAGAGACAATGAGGAGATCACCGAGC 222162 Query 703 TGTACCACAAGACAGTGTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGC 762 | || ||| || || | || || |||||| | || ||| | ||||| |||||||| | Sbjct 222161 TTTATCACTCCACCTTGGCTATCCGACCGAAGCTCATTGAGTTGATTGGAAAGTATTCTC 222102 Query 763 AAAAGAAGGGTAAGTGGAATCTTTTACGCGAAT-TTGTGTGTTG--GCCACTGATCGTGT 819 | || |||||| || || | | | | |||| ||| | | | | | | | ||| Sbjct 222101 AGAAAAAGGGTGAGCAGATTGATGTGAGGGAATATTGCCAGAAGCTGACTCACAACCTGT 222042 Query 820 TCCAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAAC 879 ||| |||||||| |||||||||||||||||||||||||| | || || || || | Sbjct 222041 ---AGACGATTTCACCCAGCTCAACGAGAAGTTCATCAAGGCTAGACGGGATTATGAGTC 221985 Query 880 CCTCCTTGAAGCCTCGATGTCGCAACCA 907 ||| | || || || ||||| |||||| Sbjct 221984 CCTGTTAGAGGCTTCCATGTCCCAACCA 221957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945311010915