Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq33 199 1e-47 >seq33 Length=3634720 Score = 199 bits (220), Expect = 1e-47 Identities = 243/328 (74%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 || ||||| || || || || || | || ||||| || | |||||| || || || Sbjct 2170490 GGTACCACCGCCGCCACTGTGTCGAGGGTGCGCGCACTGTTCGACTTTGTCCCGTCCGAG 2170549 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 ||||||||| ||| ||| || |||||| | ||||||||||||||||| || |||||| Sbjct 2170550 CCCGGCGAGCTGGAATTCAAGAAGGGCGACGTGATTGCGGTTCTCGAGTCAGTCTACAAG 2170609 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || || ||| || |||| ||||| ||||| | ||||| |||||| Sbjct 2170610 GACTGGTGGCGAGGCTCGCTGAAGGGCAAGACTGGCATTTTCCCGTTGAACTACGTCGAG 2170669 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 || || ||| || || ||| ||||| || | || || ||||||||||| || || Sbjct 2170670 AAACTTACGGACCCCACACCGGACGAGCTGCAGCGGGAGGCGCAGATGGAGGCCGAGGTG 2170729 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668 || || ||||| ||||||||||||||| |||| |||||||||| | ||| | || | Sbjct 2170730 TTCGCTGAGATAAAGAACGTGGAGAAGTTGCTTACTCTGCTGAGTACTTCTAATACG-GC 2170788 Query 669 GCCGACGCTAG-GGACAATGAGGAGATC 695 ||||| | || ||| |||||||||||| Sbjct 2170789 GCCGAGGGAAGAGGATAATGAGGAGATC 2170816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945593721420