Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2541 141 3e-30 >seq2541 Length=2298 Score = 141 bits (156), Expect = 3e-30 Identities = 236/338 (70%), Gaps = 5/338 (1%) Strand=Plus/Minus Query 364 TTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGC 423 || ||||||| || ||||| ||||| || || | || || || | || ||| | Sbjct 1385 TTCCATCTGGCACAACAGCCGCTACAGTTTCGAGAGTAAAAGCGCTATTTGATTTCCAGG 1326 Query 424 CCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTG 483 || | || || | || || || | || || || || |||||||| | | |||| Sbjct 1325 CCACTGATCCGGATGAATTACAATTTAGAAAGGGTGATATCATTGCGGTAGTTGGCTCTG 1266 Query 484 TGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACT 543 |||| ||||||||||||| || || | || || | || || |||||||| ||||| | Sbjct 1265 TGTATAAGGACTGGTGGAGAGGATCGTTACGAGGCAATACGGGAATCTTCCCTCTCAATT 1206 Query 544 ATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGG 603 ||||||||||| || ||| || || |||||| | | ||||| || || ||||||| Sbjct 1205 ATGTCGAGAAGTTGATGGACCCAACGGCAGAGGAGTTACAAAGAGAGGCACAAATGGAGG 1146 Query 604 CGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT---A 660 | || || ||||| ||||||||||| ||||||||| | || | || || || ||| | Sbjct 1145 CAGAGGTGTTTGCAGAGATCAAGAATGTGGAGAAGTTACTCACACTTCTCAGTACTTCAA 1086 Query 661 GTTC-GAGTGCCGACGCTAGGGACAATGAGGAGATCAC 697 |||| |||| | | | |||| ||||| ||||| || Sbjct 1085 GTTCTGAGT-TGAATGTTCGGGATAATGAAGAGATAAC 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944318995275