Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq875 154 5e-34
>seq875
Length=12519
Score = 154 bits (170), Expect = 5e-34
Identities = 210/293 (72%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426
|||| || || || || |||||||| || || ||| | || |||||||| ||| ||
Sbjct 1068 CATCCGGCACAACGGCTGCTACCGTTTCACGAGTTAGAGCGCTTTACGATTTCCAAGCCA 1009
Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486
| || | | |||||| ||||| ||||| || ||||| | || | | || ||||
Sbjct 1008 CCGATGCTGACGAGTTACAATTCCGGAAAGGAGATATTATCACAGTGGTAGGCTCGGTGT 949
Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546
|||| || ||||||| || || | || || || || || || ||||| | || || |
Sbjct 948 ACAAAGATTGGTGGAGAGGATCGTTACGAGGCCAAACGGGGATTTTCCCTTTAAATTACG 889
Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606
| ||||| || ||||||||| ||| || || || | |||||||| ||||| || |
Sbjct 888 TTGAGAAATTGATGGATCCTACACCGGAAGAACTACAGCGGGAAGCTCAAATGGAAGCCG 829
Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659
|||| || || |||||||||||||| ||||||||||| | || ||||| |||
Sbjct 828 AAGTTTTCGCCGAGATCAAGAACGTAGAGAAGCTGCTCACGCTACTGAGTACT 776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15942960380325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |