Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq875 154 5e-34 >seq875 Length=12519 Score = 154 bits (170), Expect = 5e-34 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 |||| || || || || |||||||| || || ||| | || |||||||| ||| || Sbjct 1068 CATCCGGCACAACGGCTGCTACCGTTTCACGAGTTAGAGCGCTTTACGATTTCCAAGCCA 1009 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 | || | | |||||| ||||| ||||| || ||||| | || | | || |||| Sbjct 1008 CCGATGCTGACGAGTTACAATTCCGGAAAGGAGATATTATCACAGTGGTAGGCTCGGTGT 949 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 |||| || ||||||| || || | || || || || || || ||||| | || || | Sbjct 948 ACAAAGATTGGTGGAGAGGATCGTTACGAGGCCAAACGGGGATTTTCCCTTTAAATTACG 889 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 | ||||| || ||||||||| ||| || || || | |||||||| ||||| || | Sbjct 888 TTGAGAAATTGATGGATCCTACACCGGAAGAACTACAGCGGGAAGCTCAAATGGAAGCCG 829 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 |||| || || |||||||||||||| ||||||||||| | || ||||| ||| Sbjct 828 AAGTTTTCGCCGAGATCAAGAACGTAGAGAAGCTGCTCACGCTACTGAGTACT 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15942960380325