Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242995.1_202017-08- 07] 4,289 sequences; 35,887,177 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq1247 159 1e-35 >seq1247 Length=14769 Score = 159 bits (176), Expect = 1e-35 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 367 CATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCT 426 |||| || || || || |||||||| || || ||| | || |||||||||||| || Sbjct 2431 CATCCGGCACAACGGCTGCTACCGTTTCACGAGTTAGAGCGCTTTACGACTTCCAAGCCA 2372 Query 427 CGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGT 486 | || | | |||||| ||||| ||||| || ||||| | || | | || |||| Sbjct 2371 CCGATGCTGACGAGTTACAATTCCGGAAAGGAGATATTATCACAGTGGTAGGCTCAGTGT 2312 Query 487 ACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATG 546 |||| || ||||||| || || | || || || || || || ||||| | || || | Sbjct 2311 ACAAAGATTGGTGGAGAGGATCGTTACGAGGCCAAACGGGGATTTTCCCTTTAAATTACG 2252 Query 547 TCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGG 606 | |||||| || ||||||||| ||| || || || | |||||||| ||||| || | Sbjct 2251 TTGAGAAGTTGATGGATCCTACACCGGAAGAACTACAGCGGGAAGCTCAAATGGAAGCCG 2192 Query 607 AAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACT 659 |||| || || |||||||||||||| |||||||| || | || ||||| ||| Sbjct 2191 AAGTTTTCGCCGAGATCAAGAACGTAGAGAAGCTACTCACGCTACTGAGTACT 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15944851976955