Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Shiraia_20sp._20slf14_20[genbank_20GCA_5F000498155.1_202013-11-21] 288 sequences; 32,067,383 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq13 385 2e-103 >seq13 Length=1064643 Score = 385 bits (426), Expect = 2e-103 Identities = 660/944 (70%), Gaps = 44/944 (5%) Strand=Plus/Plus Query 9 AAGGCAAAGATCCTCGAGCGTATGGGTGAATGGACGGAGATGTTC--GCCAGTAACCCTG 66 ||||| ||||| ||||| || |||| ||| ||| |||| |||||| || || |||| | Sbjct 897917 AAGGCCAAGATTCTCGAACGAATGGCTGAGTGGTCGGAAATGTTCTCGCAAG--ACCCAG 897974 Query 67 ATCTTGGCATCATGGAGCAGGCCTATATGAGGCTTAAGACACAAAGTGCGTGTGA--TCA 124 | ||||| || |||| | || || |||| || || |||||||| ||| | | | Sbjct 897975 ACCTTGGTATTATGGCGGGAGCATACATGAAACTCAAATCACAAAGTACGTAAAACGTAA 898034 Query 125 ACTCTGGTTCGTTGGGAGCACTGACCAACGTGTTGTAGACCCTAACCTGCGACCTCCGTC 184 | || |||| | || || || | ||| || ||| ||||| | || || Sbjct 898035 ATTCGCATTCGAAATAAAG-CTAACGCACAT-----AGATCCCAACTTGCGAGCGCCTTC 898088 Query 185 GAAACCTCAGAAGACCCAGATCACGGACTCGGACCGCCAGAAGGAAGAGGAGGAGCTACA 244 ||| |||||||||||||| ||| | ||||| ||||||||||| ||||| || |||||||| Sbjct 898089 GAAGCCTCAGAAGACCCAAATCTCCGACTCTGACCGCCAGAAAGAAGAAGAAGAGCTACA 898148 Query 245 GATGGCGCTGGCACTCTCCGTCAAGGAAAGCGGGACCGAGCCATCCGCCGCCAGGTCCAA 304 ||||||||| ||| | ||| |||| || | || || | | || ||| | || Sbjct 898149 GATGGCGCTAGCAATGTCCATCAAAGA------GTCCAAGGGAGCAGC-GCCTGCAGCAG 898201 Query 305 CCAGCCGCAAGCAAAAGCCCCACAACAATCCG---CCC---CGGAACAAGAGCAGCATCA 358 ||| ||||||| | || || |||||| ||| | | ||| | | ||| Sbjct 898202 CCA-----AAGCAAATACGCCTCAGGAATCCGAGTCCCAATCTGCCCAAAT--ATC-TCA 898253 Query 359 AGCTATTGCATCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTT 418 | | | ||||||| || || ||||| |||||||| ||||| || || | | |||||| Sbjct 898254 ACCAGTGCCATCTGGTACAACTGCAGCCACCGTCTCACGCGTACGAGCTTTGTTCGACTT 898313 Query 419 CACGCCCTCGGAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGA 478 ||| || ||||| || ||||| ||| || || ||||| ||||| || | || Sbjct 898314 TCAGCCTTCAGAACCAGGAGAGTTACAGTTCAAGAAGGGTGACATCATTGCCGTGTTGGA 898373 Query 479 GTCTGTGTACAAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCT 538 || || |||||||| ||||||||||| || || ||||| ||||| || |||||||| || Sbjct 898374 ATCCGTATACAAGGATTGGTGGAAGGGATCACTTCGTGGTCAGACTGGAATCTTCCCACT 898433 Query 539 CAACTATGTCGAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGAT 598 |||||| || ||||| ||||| || ||||| || ||||| || | |||||| |||| Sbjct 898434 CAACTACGTGGAGAAACTGCAAGACCCTACTCGTGAAGAGCTGGAAAAAGAAGCACAGAC 898493 Query 599 GGAGGCGGAAGTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCAC 658 ||||| || ||||||||| | ||| || || || ||||| || |||||| ||||||| Sbjct 898494 TGAGGCTGAGGTCTTTGCGCAAATCCGCAATGTTGAAAAGCTACTTGCTCTGTTGAGCAC 898553 Query 659 TAGTTCGAGTGCCGACGCTAGGGACAATGAGGAGATCACTTCGCTGTACCACAAGACAGT 718 ||| |||| || | | ||||||||||||| |||||| ||| || || ||| | Sbjct 898554 AAGT---AGTGGTGAAGTTCGGGACAATGAGGAAATCACTGAGCTCTATCATTCCACACT 898610 Query 719 GTCGATACGGCCGAAGTTGATCGAGCTCATTGGCAAGTATTCGCAAAAGAAGGGTAAGTG 778 | | || || || ||| | || ||||| ||||| || || || || ||||| |||||| | Sbjct 898611 GGCCATTCGTCCTAAGCTTATAGAGCTTATTGGAAAATACTCACAGAAGAAAGGTAAGCG 898670 Query 779 --GAATCTTTTACGCGAATTTGTGTGTTGGCCACTGATCGTGTTCCAGATGATTTCACGC 836 ||| | | | | || || || | ||| || | | ||||||| ||||| | Sbjct 898671 ACGAA-CATGCATTCCAAACTGAGTAGT----ACTAAT-GAATGTCAGATGACTTCACTC 898724 Query 837 AGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCCTCCTTGAAGCCTCGA 896 |||| ||||| ||||||||||| || ||||| || || || | | ||||| || || | Sbjct 898725 AGCTAAACGAAAAGTTCATCAAAGCTCGCCGAGATTATGAGTCGTTGCTTGAGGCGTCCA 898784 Query 897 TGTCGCAACCAGCGCAGCCCGGCTACGGTCGTCAACCCTATGGC 940 |||| || || ||||||| |||||| || ||| |||||| Sbjct 898785 TGTCACAGCCCCAGCAGCCCACGTACGGTGGTAGACCATATGGC 898828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945549771360