Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq2 208 2e-50 >seq2 Length=3643318 Score = 208 bits (230), Expect = 2e-50 Identities = 242/326 (74%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431 ||||||||||| ||||| || || || || |||||| | |||||||| ||| |||||| Sbjct 3591993 GGAACCACAGCTGCTACAGTGTCACGGGTGCGCGCCATGTACGACTTTGTGCCGTCGGAA 3592052 Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491 |||||| ||| ||| || ||||| |||||||| || || ||||| ||||||||| Sbjct 3592053 GAGGGCGAGCTGGAGTTCAAAAAGGGCGATATTATTGCCGTGCTGGAGTCGGTGTACAAG 3592112 Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551 ||||||||| || ||||||||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 3592113 GACTGGTGGCGCGGCTCTCTGCGTGGCCAGACGGGCATTTTCCCGCTAAACTACGTCGAG 3592172 Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611 |||||| |||||| || |||||||| || | || || |||||| || || || Sbjct 3592173 AAGCTGACGGATCCGACGCCCGAGGAGCTGCAGCGGGAGGCCATGATGGAAGCCGAGGTG 3592232 Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668 ||| | ||||| || || |||||||| | | |||||||||| | || ||| | Sbjct 3592233 TTTTCTGAGATTCGCAATGTCGAGAAGCTCTTGACCCTGCTGAGCACGTCGAGCTCGGGG 3592292 Query 669 GCCGACGCTAGGGACAATGAGGAGAT 694 | | || |||||||||||||| Sbjct 3592293 CCAGGATCTGACGACAATGAGGAGAT 3592318 Score = 102 bits (112), Expect = 3e-18 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881 |||| || || || ||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct 3592529 CAGACGACTTTACTCAGCTCAACGAAAAGTTCATCAAGGCTCGCCGCGACTATGAGACCC 3592588 Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922 | || || ||||| ||| |||| ||| |||| | | ||||| Sbjct 3592589 TGCTCGAGGCCTCCATGGCGCACCCACCGCAACACAGCTAC 3592629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945594767850