Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_013699.1
Length=5018
Score E
Sequences producing significant alignments: (Bits) Value
seq2 208 2e-50
>seq2
Length=3643318
Score = 208 bits (230), Expect = 2e-50
Identities = 242/326 (74%), Gaps = 3/326 (1%)
Strand=Plus/Plus
Query 372 GGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCGGAA 431
||||||||||| ||||| || || || || |||||| | |||||||| ||| ||||||
Sbjct 3591993 GGAACCACAGCTGCTACAGTGTCACGGGTGCGCGCCATGTACGACTTTGTGCCGTCGGAA 3592052
Query 432 CCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTACAAG 491
|||||| ||| ||| || ||||| |||||||| || || ||||| |||||||||
Sbjct 3592053 GAGGGCGAGCTGGAGTTCAAAAAGGGCGATATTATTGCCGTGCTGGAGTCGGTGTACAAG 3592112
Query 492 GACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTCGAG 551
||||||||| || ||||||||||| ||||| ||||| ||||| || ||||| ||||||
Sbjct 3592113 GACTGGTGGCGCGGCTCTCTGCGTGGCCAGACGGGCATTTTCCCGCTAAACTACGTCGAG 3592172
Query 552 AAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAAGTC 611
|||||| |||||| || |||||||| || | || || |||||| || || ||
Sbjct 3592173 AAGCTGACGGATCCGACGCCCGAGGAGCTGCAGCGGGAGGCCATGATGGAAGCCGAGGTG 3592232
Query 612 TTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCA---CTAGTTCGAGT 668
||| | ||||| || || |||||||| | | |||||||||| | || ||| |
Sbjct 3592233 TTTTCTGAGATTCGCAATGTCGAGAAGCTCTTGACCCTGCTGAGCACGTCGAGCTCGGGG 3592292
Query 669 GCCGACGCTAGGGACAATGAGGAGAT 694
| | || ||||||||||||||
Sbjct 3592293 CCAGGATCTGACGACAATGAGGAGAT 3592318
Score = 102 bits (112), Expect = 3e-18
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 822 CAGATGATTTCACGCAGCTCAACGAGAAGTTCATCAAGGCACGCCGCGACTACGAAACCC 881
|||| || || || ||||||||||| |||||||||||||| ||||||||||| || ||||
Sbjct 3592529 CAGACGACTTTACTCAGCTCAACGAAAAGTTCATCAAGGCTCGCCGCGACTATGAGACCC 3592588
Query 882 TCCTTGAAGCCTCGATGTCGCAACCAGCGCAGCCCGGCTAC 922
| || || ||||| ||| |||| ||| |||| | | |||||
Sbjct 3592589 TGCTCGAGGCCTCCATGGCGCACCCACCGCAACACAGCTAC 3592629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15945594767850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |