Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20asperellum_20[genbank_20GCA_5F000733085.2_202015-06- 08] 1,439 sequences; 37,686,724 total letters Query= NC_013699.1 Length=5018 Score E Sequences producing significant alignments: (Bits) Value seq156 185 3e-43 >seq156 Length=78955 Score = 185 bits (204), Expect = 3e-43 Identities = 242/333 (73%), Gaps = 9/333 (3%) Strand=Plus/Plus Query 369 TCTGGAACCACAGCAGCTACCGTCTCCCGCGTTCGCGCCCTTTACGACTTCACGCCCTCG 428 || || || ||||| ||||| || | | || || || || | |||||| |||| | Sbjct 46811 TCGGGCACTACAGCTGCTACTGTGAGCAGAGTGCGTGCTCTGTTCGACTTTGAGCCCACC 46870 Query 429 GAACCCGGCGAGTTGGCTTTCCGCAAAGGCGACATTATTGCGGTTCTCGAGTCTGTGTAC 488 || ||||||||| ||| ||| || |||||| | || || || || ||| ||||||| Sbjct 46871 GAGCCCGGCGAGCTGGAGTTCAAAAAGGGCGACGTCATCGCTGTGCTAGAGAGTGTGTAC 46930 Query 489 AAGGACTGGTGGAAGGGTTCTCTGCGTGGACAGACCGGCATCTTCCCCCTCAACTATGTC 548 |||||||||||| || || || ||| |||| ||||| |||||||||||||| || Sbjct 46931 AAGGACTGGTGGCGCGGGTCGCTCAAGGGAAAGACGGGCATTTTCCCCCTCAACTACGTA 46990 Query 549 GAGAAGCTGCAGGATCCTACCAAGGAGGAGCTCGAGAGAGAAGCTCAGATGGAGGCGGAA 608 ||||||||| |||||| || ||||||| | || |||| || ||||||||||| || Sbjct 46991 GAGAAGCTGACGGATCCCACGCCGGAGGAGATGCAGCGAGAGGCCCAGATGGAGGCTGAG 47050 Query 609 GTCTTTGCGGAGATCAAGAACGTGGAGAAGCTGCTAGCTCTGCTGAGCACTAGTTCGA-- 666 || || || ||||||||||| |||||||| || | | || |||||| | ||||| Sbjct 47051 GTTTTCGCTGAGATCAAGAATGTGGAGAAACTCTTGACGCTCCTGAGCGC---TTCGAAC 47107 Query 667 --GTGCCGACGCTA--GGGACAATGAGGAGATC 695 | | | ||| | |||||||||||||||| Sbjct 47108 ATGGGACCACGGGAAGAGGACAATGAGGAGATC 47140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15945349031205